Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2567846..2568363 Replicon chromosome
Accession NZ_LR027873
Organism Staphylococcus aureus strain BPH2070 isolate BPH2070

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag E0E08_RS13490 Protein ID WP_000113262.1
Coordinates 2567846..2568112 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID T1YB60
Locus tag E0E08_RS13495 Protein ID WP_000584499.1
Coordinates 2568112..2568363 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E0E08_RS13460 2563272..2563808 - 537 WP_000169317.1 GNAT family N-acetyltransferase -
E0E08_RS13465 2564041..2564865 - 825 WP_000572040.1 formate/nitrite transporter family protein -
E0E08_RS13470 2565082..2565264 - 183 WP_000230294.1 hypothetical protein -
E0E08_RS13475 2565348..2565815 - 468 WP_000153344.1 SRPBCC domain-containing protein -
E0E08_RS13480 2566001..2567551 - 1551 WP_000727762.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
E0E08_RS13485 2567740..2567811 - 72 Protein_2487 hypothetical protein -
E0E08_RS13490 2567846..2568112 - 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
E0E08_RS13495 2568112..2568363 - 252 WP_000584499.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
E0E08_RS13500 2568528..2568629 - 102 WP_001791744.1 hypothetical protein -
E0E08_RS13505 2568636..2569235 - 600 WP_000162813.1 DsbA family protein -
E0E08_RS13510 2569254..2569616 - 363 WP_000819843.1 DUF4467 domain-containing protein -
E0E08_RS13515 2569871..2571121 + 1251 WP_001012222.1 FemA/FemB family glycyltransferase FmhA -
E0E08_RS13520 2571218..2571949 - 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
E0E08_RS13525 2571946..2572665 - 720 WP_000479576.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T286032 WP_000113262.1 NZ_LR027873:c2568112-2567846 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9433.60 Da        Isoelectric Point: 4.3407

>AT286032 WP_000584499.1 NZ_LR027873:c2568363-2568112 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7BWF
PDB 6L8E
AlphaFold DB T1YB60

References