Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/COG4683-HTH_37
Location 3371385..3372025 Replicon chromosome
Accession NZ_LR025088
Organism Klebsiella pneumoniae isolate KP980

Toxin (Protein)


Gene name higB Uniprot ID W9BBY1
Locus tag KP980_RS17070 Protein ID WP_016529833.1
Coordinates 3371678..3372025 (-) Length 116 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag KP980_RS17065 Protein ID WP_040181955.1
Coordinates 3371385..3371678 (-) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KP980_RS17045 3367584..3368342 - 759 WP_002920548.1 DeoR/GlpR family transcriptional regulator -
KP980_RS17050 3368392..3369222 - 831 WP_024622927.1 rhomboid family intramembrane serine protease GlpG -
KP980_RS17055 3369273..3369602 - 330 WP_002920552.1 thiosulfate sulfurtransferase GlpE -
KP980_RS17060 3369807..3371315 + 1509 WP_023301456.1 glycerol-3-phosphate dehydrogenase -
KP980_RS17065 3371385..3371678 - 294 WP_040181955.1 helix-turn-helix transcriptional regulator Antitoxin
KP980_RS17070 3371678..3372025 - 348 WP_016529833.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
KP980_RS17075 3372201..3374648 - 2448 WP_002920561.1 glycogen phosphorylase -
KP980_RS17080 3374666..3376099 - 1434 WP_002920564.1 glycogen synthase GlgA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(13-107)

Antitoxin

HigA2-like, helix-turn-helix domain

(9-87)


Sequences

Toxin        


Download         Length: 116 a.a.        Molecular weight: 13549.56 Da        Isoelectric Point: 5.6749

>T285822 WP_016529833.1 NZ_LR025088:c3372025-3371678 [Klebsiella pneumoniae]
MWDVETTDTFDTWFELQSRALKEDMLATMLILSEFAPQLGRPYVDTVKDSTFQNMKELRVQHHGLPIRAFFAFDPLRKAI
VLCAGDKDGMNEKRFYKEMITLADREFSQHLTKER

Download         Length: 348 bp

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 10539.30 Da        Isoelectric Point: 10.1464

>AT285822 WP_040181955.1 NZ_LR025088:c3371678-3371385 [Klebsiella pneumoniae]
MATLKELMAKQSPDSQQRIAAKAAEIRQSVALNLLREELQMSQTEMAAAMGVKQPTIAKMEQADNDPRLSTLKRYIAALG
GELSINVTLPTGKKSLV

Download         Length: 294 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB W9BBY1

Antitoxin

Source ID Structure

References