Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2591619..2592142 Replicon chromosome
Accession NZ_LN626917
Organism Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1

Toxin (Protein)


Gene name yoeB Uniprot ID A0A2W3LFI1
Locus tag SRS_RS13345 Protein ID WP_000074047.1
Coordinates 2591619..2591885 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A2S6D1W5
Locus tag SRS_RS13350 Protein ID WP_000587617.1
Coordinates 2591885..2592142 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SRS_RS13325 2586829..2588016 - 1188 WP_000026190.1 MFS transporter -
SRS_RS13330 2588410..2589186 - 777 WP_000072154.1 iron export ABC transporter permease subunit FetB -
SRS_RS13335 2589179..2589841 - 663 WP_000923514.1 ATP-binding cassette domain-containing protein -
SRS_RS13340 2590187..2591263 - 1077 WP_001076679.1 M42 family metallopeptidase -
SRS_RS13345 2591619..2591885 - 267 WP_000074047.1 Txe/YoeB family addiction module toxin Toxin
SRS_RS13350 2591885..2592142 - 258 WP_000587617.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
SRS_RS13360 2592502..2592957 + 456 WP_000732090.1 YehR family lipoprotein -
SRS_RS13365 2593125..2594702 - 1578 WP_000143489.1 FMN-binding glutamate synthase family protein -
SRS_RS13370 2594898..2595647 + 750 WP_000072447.1 CPBP family intramembrane metalloprotease -
SRS_RS13375 2595871..2597064 - 1194 WP_000675407.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(4-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10662.26 Da        Isoelectric Point: 10.1384

>T285499 WP_000074047.1 NZ_LN626917:c2591885-2591619 [Staphylococcus aureus]
MSNYTVKIKNSAKSDLKKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRIVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9747.71 Da        Isoelectric Point: 4.1353

>AT285499 WP_000587617.1 NZ_LN626917:c2592142-2591885 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDSSGTTNIDDI
DWDNL

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2W3LFI1

Antitoxin

Source ID Structure
AlphaFold DB A0A2S6D1W5

References