285355

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 5048671..5049260 Replicon chromosome
Accession NZ_HG999365
Organism Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 765 isolated from C. illinoinensis

Toxin (Protein)


Gene name graT Uniprot ID -
Locus tag KHN80_RS21695 Protein ID WP_211914473.1
Coordinates 5048979..5049260 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name graA Uniprot ID -
Locus tag KHN80_RS21690 Protein ID WP_211914472.1
Coordinates 5048671..5048961 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KHN80_RS21675 (XCY_004332) 5044068..5044889 + 822 WP_211914470.1 restriction endonuclease -
KHN80_RS21680 (XCY_004333) 5045021..5047624 + 2604 WP_211914471.1 AAA family ATPase -
KHN80_RS21685 (XCY_004334) 5047796..5048128 + 333 WP_039513672.1 lipoprotein -
KHN80_RS22120 5048278..5048480 + 203 Protein_4249 hypothetical protein -
KHN80_RS21690 (XCY_004335) 5048671..5048961 - 291 WP_211914472.1 HigA family addiction module antitoxin Antitoxin
KHN80_RS21695 (XCY_004336) 5048979..5049260 - 282 WP_211914473.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
KHN80_RS21700 (XCY_004337) 5049400..5051556 - 2157 WP_211914474.1 exodeoxyribonuclease V subunit alpha -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(1-93)

Antitoxin

Cro/C1-type helix-turn-helix domain

(14-68)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 11032.69 Da        Isoelectric Point: 9.7972

>T285355 WP_211914473.1 NZ_HG999365:c5049260-5048979 [Xanthomonas arboricola pv. juglandis]
MIRSFVDKEAEKIWLGERSRRLPADIQSVARRKLRMLNAAAHLDDLRIPPANRLEALKGERRGQYSIRINDQWRICFRWM
EGDVAEVDIVDYH

Download         Length: 282 bp

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10498.16 Da        Isoelectric Point: 7.2043

>AT285355 WP_211914472.1 NZ_HG999365:c5048961-5048671 [Xanthomonas arboricola pv. juglandis]
MTVLPNIHPGEVLLEEFLEPMGISQNALARATGVPPRRINEIVLGKRGITADTAVRLAAALGTTERFWLSLQADYELEQA
HRALGDLPSRIKRLAA

Download         Length: 291 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References