284646

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-RelB
Location 1068440..1068972 Replicon chromosome
Accession NZ_CP128492
Organism Novosphingobium resinovorum strain HR1a

Toxin (Protein)


Gene name yoeB Uniprot ID A0A1D8A0G5
Locus tag QUC32_RS14835 Protein ID WP_069707532.1
Coordinates 1068703..1068972 (+) Length 90 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag QUC32_RS14830 Protein ID WP_289357645.1
Coordinates 1068440..1068706 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QUC32_RS14815 (QUC32_14815) 1063462..1065390 - 1929 WP_069707529.1 EAL domain-containing protein -
QUC32_RS14820 (QUC32_14820) 1065582..1068062 + 2481 WP_069707530.1 ATP-dependent helicase HrpB -
QUC32_RS14825 (QUC32_14825) 1068108..1068386 + 279 WP_008830939.1 ETC complex I subunit -
QUC32_RS14830 (QUC32_14830) 1068440..1068706 + 267 WP_289357645.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
QUC32_RS14835 (QUC32_14835) 1068703..1068972 + 270 WP_069707532.1 Txe/YoeB family addiction module toxin Toxin
QUC32_RS14845 (QUC32_14845) 1069227..1071131 + 1905 WP_037519972.1 DNA polymerase III subunit gamma/tau -
QUC32_RS14850 (QUC32_14850) 1071133..1071468 + 336 WP_008830943.1 YbaB/EbfC family nucleoid-associated protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(2-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-70)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10502.94 Da        Isoelectric Point: 10.0505

>T284646 WP_069707532.1 NZ_CP128492:1068703-1068972 [Novosphingobium resinovorum]
VKIVFASRTWEDYQHWVANDRTTLERLNALIEQCRRTPFKGTGKPEPLKGELQGWWSRRINQADRLVYRVAGSGAEQRLE
IAQCRFHYV

Download         Length: 270 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9761.07 Da        Isoelectric Point: 7.3211

>AT284646 WP_289357645.1 NZ_CP128492:1068440-1068706 [Novosphingobium resinovorum]
MEVLPFSEARANFKALMDHVVDDRSPVIVTRQKAEAVVVVSLSDWNAMAETMHLVSTPANSTRLRDSVRELDGGKGRNAI
SSSHRRLE

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A1D8A0G5

Antitoxin

Source ID Structure

References