Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/COG4683-HTH_37
Location 2251637..2252556 Replicon chromosome
Accession NZ_CP127276
Organism Mycobacterium tuberculosis strain 5521

Toxin (Protein)


Gene name HigB2 Uniprot ID L7N4R2
Locus tag QRF08_RS10615 Protein ID WP_003900449.1
Coordinates 2251951..2252556 (-) Length 202 a.a.

Antitoxin (Protein)


Gene name HigA2 Uniprot ID L7N5K9
Locus tag QRF08_RS10610 Protein ID WP_003410124.1
Coordinates 2251637..2251942 (-) Length 102 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QRF08_RS10580 (QRF08_10580) 2246648..2247904 - 1257 WP_003902247.1 HNH endonuclease signature motif containing protein -
QRF08_RS10585 (QRF08_10585) 2248258..2248833 + 576 WP_003410100.1 hypothetical protein -
QRF08_RS10590 (QRF08_10590) 2248830..2249870 + 1041 WP_003410103.1 ImmA/IrrE family metallo-endopeptidase -
QRF08_RS10595 (QRF08_10595) 2250112..2250831 + 720 WP_003410108.1 DUF433 domain-containing protein -
QRF08_RS10600 (QRF08_10600) 2250821..2251237 + 417 WP_003410114.1 hypothetical protein -
QRF08_RS10605 (QRF08_10605) 2251253..2251552 - 300 WP_003410120.1 hypothetical protein -
QRF08_RS10610 (QRF08_10610) 2251637..2251942 - 306 WP_003410124.1 XRE family transcriptional regulator Antitoxin
QRF08_RS10615 (QRF08_10615) 2251951..2252556 - 606 WP_003900449.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QRF08_RS10620 (QRF08_10620) 2252581..2252940 - 360 WP_003410131.1 hypothetical protein -
QRF08_RS10625 (QRF08_10625) 2253100..2253495 - 396 WP_225936727.1 hypothetical protein -
QRF08_RS10630 (QRF08_10630) 2253555..2255072 - 1518 Protein_2101 DEAD/DEAH box helicase family protein -
QRF08_RS10635 (QRF08_10635) 2255582..2256580 - 999 WP_003410146.1 cation diffusion facilitator family transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(86-181)

Antitoxin

HigA2-like, helix-turn-helix domain

(32-92)


Sequences

Toxin        


Download         Length: 202 a.a.        Molecular weight: 22744.96 Da        Isoelectric Point: 7.3073

>T283966 WP_003900449.1 NZ_CP127276:c2252556-2251951 [Mycobacterium tuberculosis]
VNVPWENAHGGALYCLIRGDEFSAWHRLLFQRPGCAESVLACRHFLDGSPVARCSYPEEYHPCVISRIALLCDSVGWTAD
VERISAWLNGLDRETYELVFAAIEVLEEEGPALGCPLVDTVRGSRHKNMKELRPGSQGRSEVRILFAFDPARQAIMLAAG
NKAGRWTQWYDEKIKAADEMFAEHLAQFEDTKPKRRKRKKG

Download         Length: 606 bp

Antitoxin


Download         Length: 102 a.a.        Molecular weight: 11291.91 Da        Isoelectric Point: 10.7482

>AT283966 WP_003410124.1 NZ_CP127276:c2251942-2251637 [Mycobacterium tuberculosis]
MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYV
SALGGELDITVRLGDETFTLA

Download         Length: 306 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4BV20

Antitoxin

Source ID Structure
PDB 7EWC
PDB 7EWD
PDB 7EWE
AlphaFold DB A0A7U4BV30

References