Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 4815492..4816045 Replicon chromosome
Accession NZ_CP127225
Organism Xanthomonas oryzae pv. oryzae strain YNJC

Toxin (Protein)


Gene name graT Uniprot ID -
Locus tag QN060_RS21980 Protein ID WP_241443399.1
Coordinates 4815492..4815737 (+) Length 82 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag QN060_RS21985 Protein ID WP_053503948.1
Coordinates 4815755..4816045 (+) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QN060_RS21975 (QN060_21970) 4813100..4815361 + 2262 WP_131085822.1 exodeoxyribonuclease V subunit alpha -
QN060_RS21980 (QN060_21975) 4815492..4815737 + 246 WP_241443399.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QN060_RS21985 (QN060_21980) 4815755..4816045 + 291 WP_053503948.1 HigA family addiction module antitoxin Antitoxin
QN060_RS21990 (QN060_21985) 4816994..4818388 + 1395 WP_053503949.1 type III secretion system effector XopQ -
QN060_RS21995 (QN060_21990) 4818491..4818678 - 188 Protein_4172 hypothetical protein -
QN060_RS22000 (QN060_21995) 4818838..4819170 - 333 WP_003482333.1 hypothetical protein -
QN060_RS22005 (QN060_22000) 4819425..4819751 + 327 WP_285956869.1 hypothetical protein -
QN060_RS22010 (QN060_22005) 4819879..4820301 + 423 WP_242628971.1 PAAR domain-containing protein -
QN060_RS22015 (QN060_22010) 4820304..4820780 + 477 WP_053501997.1 DUF4123 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(4-81)

Antitoxin

Cro/C1-type helix-turn-helix domain

(14-68)


Sequences

Toxin        


Download         Length: 82 a.a.        Molecular weight: 9657.17 Da        Isoelectric Point: 10.2114

>T283626 WP_241443399.1 NZ_CP127225:4815492-4815737 [Xanthomonas oryzae pv. oryzae]
IRLGERSRRLPAESQMVARRKLRMLDAAAHPEDLRIPPANRLEALKGQWRGQCSIRINDQWRICFRWMEGDVFQVEIVDY
H

Download         Length: 246 bp

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10345.95 Da        Isoelectric Point: 6.4654

>AT283626 WP_053503948.1 NZ_CP127225:4815755-4816045 [Xanthomonas oryzae pv. oryzae]
MTVLANIHPGDILLEEFLEPLGISQNALARATGVPPRRINEIVLGKRGITADTAVRLAAALGTSERFWLGLQADDELEQA
HRALGDLPARIKRLAA

Download         Length: 291 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References