282966

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) rlegTA/AbiEii-AbiEi
Location 2789616..2791069 Replicon chromosome
Accession NZ_CP126568
Organism Xanthomonas oryzae pv. oryzicola strain HB8

Toxin (Protein)


Gene name rlegT Uniprot ID A0A5C2EYQ5
Locus tag QPJ94_RS12680 Protein ID WP_047339759.1
Coordinates 2789616..2790467 (-) Length 284 a.a.

Antitoxin (Protein)


Gene name rlegA Uniprot ID A0A0C5V250
Locus tag QPJ94_RS12685 Protein ID WP_024710981.1
Coordinates 2790464..2791069 (-) Length 202 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QPJ94_RS12655 2784656..2785618 - 963 WP_044751530.1 IS110 family transposase -
QPJ94_RS12660 2785843..2786145 - 303 WP_047339762.1 hypothetical protein -
QPJ94_RS12665 2787018..2787359 - 342 WP_050585837.1 ParB N-terminal domain-containing protein -
QPJ94_RS12670 2787356..2788642 - 1287 WP_228757531.1 recombinase family protein -
QPJ94_RS12675 2789059..2789529 - 471 WP_149621647.1 hypothetical protein -
QPJ94_RS12680 2789616..2790467 - 852 WP_047339759.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
QPJ94_RS12685 2790464..2791069 - 606 WP_024710981.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein Antitoxin
QPJ94_RS12690 2791313..2791660 - 348 WP_149621648.1 hypothetical protein -
QPJ94_RS12695 2791611..2792123 - 513 WP_161600049.1 helix-turn-helix domain-containing protein -
QPJ94_RS12700 2792424..2792600 + 177 WP_014503024.1 hypothetical protein -
QPJ94_RS12705 2792912..2793997 + 1086 WP_048485514.1 sensor domain-containing diguanylate cyclase -
QPJ94_RS12710 2794040..2794549 - 510 WP_014503022.1 chemotaxis protein CheW -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 2771614..2799360 27746
flank IS/Tn - - 2784656..2785618 962


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(34-262)

Antitoxin

Transcriptional regulator, AbiEi antitoxin

(8-55)


Sequences

Toxin        


Download         Length: 284 a.a.        Molecular weight: 31056.91 Da        Isoelectric Point: 7.0657

>T282966 WP_047339759.1 NZ_CP126568:c2790467-2789616 [Xanthomonas oryzae pv. oryzicola]
MSNVAASVRARLRGVAKAQGVDFNQVLVRFALERILYRLSQSEHADRFLLKGALLFTLWYDMPHRATRDADLLGFGASDL
ESVAQTFRDIASVAVDDGIVFDPASVVAEEIRKDAGYAGARILIGGELAKARCRTQIDVGFGDAVTPAPVHSVYPVLLED
LPAPRLRTYPVYTVIAEKLHAIALLGMTNSRMKDYLDLSVLLERESLDIDLLAQAVKATFERRGMAVPAALPIGMTDEFA
HDTSRQALWQAFLKKNELAPEPLAAIVVRLRAALEPALHRAAR

Download         Length: 852 bp

Antitoxin


Download         Length: 202 a.a.        Molecular weight: 22257.92 Da        Isoelectric Point: 9.9253

>AT282966 WP_024710981.1 NZ_CP126568:c2791069-2790464 [Xanthomonas oryzae pv. oryzicola]
MLSDTHTQRVLDLASQKGLLRASDLDAINAPRVVLTRLTAAGVLERVGRGLYRLPDAQGSEFESLAAIATKVPQAVFCLL
TALQFHELTTQLPRQIWIAMPRGSHAPRIGYPPVKMVQMTGDVYAAGIEEHLRDGVRLRVYGAAKTVVDCFKHRNKIGLD
VALEALKDVRAKRKATADDLWRFATVCRVANVMRPYLEAVE

Download         Length: 606 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A5C2EYQ5

Antitoxin

Source ID Structure
AlphaFold DB A0A0C5V250

References