Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 85023..85531 Replicon chromosome
Accession NZ_CP126273
Organism Curtobacterium sp. MCBD17_040

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag DEI94_RS00420 Protein ID WP_111026572.1
Coordinates 85023..85283 (-) Length 87 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag DEI94_RS00425 Protein ID WP_111010329.1
Coordinates 85280..85531 (-) Length 84 a.a.

Genomic Context

DEI94_RS00395DEI94_RS00435DEI94_RS00400DEI94_RS00405DEI94_RS00410DEI94_RS00415DEI94_RS00420DEI94_RS00425DEI94_RS00430
Location: 80480..81304 (825 bp)
Type: Others
Protein ID: WP_111011977.1
Location: 86772..87713 (942 bp)
Type: Others
Protein ID: WP_258377998.1
Location: 81339..82142 (804 bp)
Type: Others
Protein ID: WP_220037868.1
Location: 82148..82870 (723 bp)
Type: Others
Protein ID: WP_220038795.1
Location: 82981..83970 (990 bp)
Type: Others
Protein ID: WP_111026571.1
Location: 84001..84984 (984 bp)
Type: Others
Protein ID: WP_111010331.1
Location: 85023..85283 (261 bp)
Type: Toxin
Protein ID: WP_111026572.1
Location: 85280..85531 (252 bp)
Type: Antitoxin
Protein ID: WP_111010329.1
Location: 85589..86617 (1029 bp)
Type: Others
Protein ID: WP_111026573.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
DEI94_RS00395 (DEI94_00395)80480..81304+825WP_111011977.1carbohydrate ABC transporter permease-
DEI94_RS00400 (DEI94_00400)81339..82142-804WP_220037868.1ATP-binding cassette domain-containing protein-
DEI94_RS00405 (DEI94_00405)82148..82870-723WP_220038795.1GntR family transcriptional regulator-
DEI94_RS00410 (DEI94_00410)82981..83970-990WP_111026571.1acryloyl-CoA reductase-
DEI94_RS00415 (DEI94_00415)84001..84984-984WP_111010331.1aldo/keto reductase-
DEI94_RS00420 (DEI94_00420)85023..85283-261WP_111026572.1Txe/YoeB family addiction module toxinToxin
DEI94_RS00425 (DEI94_00425)85280..85531-252WP_111010329.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
DEI94_RS00430 (DEI94_00430)85589..86617-1029WP_111026573.16-phosphofructokinase-
DEI94_RS00435 (DEI94_00435)86772..87713+942WP_258377998.1DNA-3-methyladenine glycosylase 2 family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-83)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 87 a.a.        Molecular weight: 10362.57 Da        Isoelectric Point: 8.0720

>T282734 WP_111026572.1 NZ_CP126273:c85283-85023 [Curtobacterium sp. MCBD17_040]
VRYVWDDAAWADSEWWQQQDRKIVKRINGLLRDIARNGNEGIGKPEPLKHGFRGYWSRRITDEHRLVYRVTDDSVLIAQC
RYHHDE

Download         Length: 261 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9479.48 Da        Isoelectric Point: 4.4652

>AT282734 WP_111010329.1 NZ_CP126273:c85531-85280 [Curtobacterium sp. MCBD17_040]
MRILSYSETRSHFAETLNAVTDDREEVVVTRAGHESVVLVSLDDYESLKETAYLLRNPANARRLLASIERLERGEGTERD
LDE

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References