Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 414993..415518 Replicon plasmid pRspBT04e
Accession NZ_CP125653
Organism Rhizobium sp. BT04

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag QMO82_RS33095 Protein ID WP_097616517.1
Coordinates 415246..415518 (+) Length 91 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag QMO82_RS33090 Protein ID WP_097616518.1
Coordinates 414993..415244 (+) Length 84 a.a.

Genomic Context

QMO82_RS33085QMO82_RS33090QMO82_RS33095QMO82_RS33105QMO82_RS33080QMO82_RS33100QMO82_RS33110
Location: 413576..414913 (1338 bp)
Type: Others
Protein ID: WP_183608881.1
Location: 414993..415244 (252 bp)
Type: Antitoxin
Protein ID: WP_097616518.1
Location: 415246..415518 (273 bp)
Type: Toxin
Protein ID: WP_097616517.1
Location: 416839..417318 (480 bp)
Type: Others
Protein ID: WP_183608883.1
Location: 411729..413072 (1344 bp)
Type: Others
Protein ID: WP_183608880.1
Location: 415543..416715 (1173 bp)
Type: Others
Protein ID: WP_183608882.1
Location: 417352..419142 (1791 bp)
Type: Others
Protein ID: WP_183608884.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
QMO82_RS33080411729..413072-1344WP_183608880.1adenylate/guanylate cyclase domain-containing protein-
QMO82_RS33085413576..414913+1338WP_183608881.1nucleotide sugar dehydrogenase-
QMO82_RS33090414993..415244+252WP_097616518.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
QMO82_RS33095415246..415518+273WP_097616517.1Txe/YoeB family addiction module toxinToxin
QMO82_RS33100415543..416715-1173WP_183608882.1DUF3095 domain-containing protein-
QMO82_RS33105416839..417318+480WP_183608883.1class I SAM-dependent methyltransferase-
QMO82_RS33110417352..419142-1791WP_183608884.1ABC transporter ATP-binding protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideNon-Mobilizable plasmid--1..540617540617


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(1-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10818.45 Da        Isoelectric Point: 9.4680

>T282238 WP_097616517.1 NZ_CP125653:415246-415518 [Rhizobium sp. BT04]
MKLLWTPNSWEEYEYWQKTDQKMVEKINELLRDTKRSPFKGLGKPEPLKGDLSGFWSRRILGEHRLVYCVTGKGSNQQLE
IIQCRFHYEK

Download         Length: 273 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9346.53 Da        Isoelectric Point: 5.0066

>AT282238 WP_097616518.1 NZ_CP125653:414993-415244 [Rhizobium sp. BT04]
MAHVRLTEFRQNIATYFDQVLSSRAPLLVTRQGSEAMVLIAESEYESMQETLHLLSTPANSARLRESIGQLRNGQTIEND
PTL

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References