Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-RelB
Location 1622106..1622619 Replicon chromosome
Accession NZ_CP124855
Organism Chryseobacterium sp. wcd7

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag QGN23_RS07415 Protein ID WP_282906342.1
Coordinates 1622106..1622363 (-) Length 86 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag QGN23_RS07420 Protein ID WP_282906343.1
Coordinates 1622365..1622619 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QGN23_RS07390 (QGN23_07390) 1617775..1618230 - 456 WP_282906337.1 Lrp/AsnC family transcriptional regulator -
QGN23_RS07395 (QGN23_07395) 1618388..1619593 + 1206 WP_282906338.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
QGN23_RS07400 (QGN23_07400) 1619728..1620228 - 501 WP_282906339.1 5-(carboxyamino)imidazole ribonucleotide mutase -
QGN23_RS07405 (QGN23_07405) 1620274..1621470 - 1197 WP_282906340.1 TIGR03862 family flavoprotein -
QGN23_RS07410 (QGN23_07410) 1621529..1622002 - 474 WP_282906341.1 CYTH domain-containing protein -
QGN23_RS07415 (QGN23_07415) 1622106..1622363 - 258 WP_282906342.1 Txe/YoeB family addiction module toxin Toxin
QGN23_RS07420 (QGN23_07420) 1622365..1622619 - 255 WP_282906343.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
QGN23_RS07425 (QGN23_07425) 1622856..1623755 + 900 WP_282906344.1 EamA family transporter -
QGN23_RS07430 (QGN23_07430) 1623954..1624682 - 729 WP_282906345.1 helical backbone metal receptor -
QGN23_RS07435 (QGN23_07435) 1624688..1626007 - 1320 WP_282906346.1 magnesium transporter -
QGN23_RS07440 (QGN23_07440) 1626411..1627040 + 630 WP_282906347.1 CoA pyrophosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 10599.22 Da        Isoelectric Point: 8.7937

>T281352 WP_282906342.1 NZ_CP124855:c1622363-1622106 [Chryseobacterium sp. wcd7]
MKYIFVDESWEDYLYWQKIDKKKLKRINDLLKDISRTPFEGIGKPEPLKHKYAGFWSRRIDDEHRLIYKFQEDEILIAKC
RFHYD

Download         Length: 258 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9702.15 Da        Isoelectric Point: 6.3586

>AT281352 WP_282906343.1 NZ_CP124855:c1622619-1622365 [Chryseobacterium sp. wcd7]
MFIASVSDFRKDIKSYLDRVSKNFETLIINRGKDSGIVVMSLEEYNSLMATNYELSSRKNEMRLDAAIEKLKIGKSYSKE
LIEE

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References