Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 3612288..3613015 Replicon chromosome
Accession NZ_CP124511
Organism Escherichia coli strain AVS0501

Toxin (Protein)


Gene name higB Uniprot ID U9ZMR4
Locus tag QJP59_RS17825 Protein ID WP_000550189.1
Coordinates 3612288..3612602 (+) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag QJP59_RS17830 Protein ID WP_000560269.1
Coordinates 3612599..3613015 (+) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJP59_RS17805 (3608445) 3608445..3609431 - 987 WP_001385498.1 Gfo/Idh/MocA family oxidoreductase -
QJP59_RS17810 (3609510) 3609510..3610202 - 693 WP_000942551.1 vancomycin high temperature exclusion protein -
QJP59_RS17815 (3610279) 3610279..3610782 - 504 WP_001295542.1 M48 family metallopeptidase -
QJP59_RS17820 (3610867) 3610867..3612003 + 1137 WP_000018703.1 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG -
QJP59_RS17825 (3612288) 3612288..3612602 + 315 WP_000550189.1 type II toxin-antitoxin system toxin HigB Toxin
QJP59_RS17830 (3612599) 3612599..3613015 + 417 WP_000560269.1 type II toxin-antitoxin system antitoxin HigA Antitoxin
QJP59_RS17835 (3613060) 3613060..3615078 - 2019 WP_000121413.1 NADPH-dependent 2,4-dienoyl-CoA reductase -
QJP59_RS17840 (3615304) 3615304..3617655 - 2352 WP_282517599.1 alpha-glucosidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, mRNA interferase HigB

(20-92)

Antitoxin

Cro/C1-type helix-turn-helix domain

(84-135)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 12103.10 Da        Isoelectric Point: 10.0409

>T280730 WP_000550189.1 NZ_CP124511:3612288-3612602 [Escherichia coli]
MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK

Download         Length: 315 bp

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15023.47 Da        Isoelectric Point: 4.4547

>AT280730 WP_000560269.1 NZ_CP124511:3612599-3613015 [Escherichia coli]
MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAWEESAPEFVEFNAMAQAMPGG
IAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID

Download         Length: 417 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6KMQ
PDB 5IFG
PDB 5YCL
PDB 6KML

Antitoxin

Source ID Structure

References