Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HTH_XRE
Location 3517088..3517767 Replicon chromosome
Accession NZ_CP124508
Organism Escherichia coli strain AVS0068

Toxin (Protein)


Gene name higB Uniprot ID S1PK60
Locus tag QJB02_RS17210 Protein ID WP_000057523.1
Coordinates 3517465..3517767 (-) Length 101 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID S1QAY3
Locus tag QJB02_RS17205 Protein ID WP_000806442.1
Coordinates 3517088..3517429 (-) Length 114 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJB02_RS17195 (3513332) 3513332..3514264 - 933 WP_000883041.1 glutaminase A -
QJB02_RS17200 (3514526) 3514526..3517030 + 2505 WP_000083947.1 copper-exporting P-type ATPase CopA -
QJB02_RS17205 (3517088) 3517088..3517429 - 342 WP_000806442.1 HigA family addiction module antitoxin Antitoxin
QJB02_RS17210 (3517465) 3517465..3517767 - 303 WP_000057523.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QJB02_RS17215 (3517900) 3517900..3518694 + 795 WP_000365147.1 TraB/GumN family protein -
QJB02_RS17220 (3518898) 3518898..3519377 + 480 WP_000186633.1 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK -
QJB02_RS17225 (3519401) 3519401..3520201 + 801 WP_000439798.1 hypothetical protein -
QJB02_RS17230 (3520198) 3520198..3520701 + 504 WP_000667000.1 hypothetical protein -
QJB02_RS17235 (3520739) 3520739..3522391 - 1653 WP_000771748.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(9-98)

Antitoxin

Toxin-antitoxin system, antidote protein, HigA

(1-100)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11809.44 Da        Isoelectric Point: 10.3980

>T280705 WP_000057523.1 NZ_CP124508:c3517767-3517465 [Escherichia coli]
MAQKKNIRSFRDAWLADFFVHSTPHRKIPAEIHTTLSRKLDIINAATSHRDLRSPPGNRYEELSGKLQEYSSIRVNKQYR
LIFKWVNGKAEELFLDPHNY

Download         Length: 303 bp

Antitoxin


Download         Length: 114 a.a.        Molecular weight: 13171.10 Da        Isoelectric Point: 5.7790

>AT280705 WP_000806442.1 NZ_CP124508:c3517429-3517088 [Escherichia coli]
MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLW
EVENNMRTQEELGRIETVAEYLARREERAKKVA

Download         Length: 342 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1PK60

Antitoxin

Source ID Structure
PDB 2EBY
AlphaFold DB S1QAY3

References