Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 643549..644276 Replicon chromosome
Accession NZ_CP124490
Organism Escherichia coli strain AVS0456

Toxin (Protein)


Gene name higB Uniprot ID U9ZMR4
Locus tag QJP91_RS03190 Protein ID WP_000550189.1
Coordinates 643549..643863 (+) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag QJP91_RS03195 Protein ID WP_283187786.1
Coordinates 643860..644276 (+) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJP91_RS03170 (639706) 639706..640692 - 987 WP_001385498.1 Gfo/Idh/MocA family oxidoreductase -
QJP91_RS03175 (640771) 640771..641463 - 693 WP_000942551.1 vancomycin high temperature exclusion protein -
QJP91_RS03180 (641540) 641540..642043 - 504 WP_001295542.1 M48 family metallopeptidase -
QJP91_RS03185 (642128) 642128..643264 + 1137 WP_000018703.1 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG -
QJP91_RS03190 (643549) 643549..643863 + 315 WP_000550189.1 type II toxin-antitoxin system toxin HigB Toxin
QJP91_RS03195 (643860) 643860..644276 + 417 WP_283187786.1 type II toxin-antitoxin system antitoxin HigA Antitoxin
QJP91_RS03200 (644321) 644321..646339 - 2019 WP_000121413.1 NADPH-dependent 2,4-dienoyl-CoA reductase -
QJP91_RS03205 (646565) 646565..648916 - 2352 WP_000695432.1 alpha-glucosidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, mRNA interferase HigB

(20-92)

Antitoxin

Cro/C1-type helix-turn-helix domain

(84-136)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 12103.10 Da        Isoelectric Point: 10.0409

>T280539 WP_000550189.1 NZ_CP124490:643549-643863 [Escherichia coli]
MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK

Download         Length: 315 bp

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15051.53 Da        Isoelectric Point: 4.4547

>AT280539 WP_283187786.1 NZ_CP124490:643860-644276 [Escherichia coli]
MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAWEESAPEFVEFNAMVQAMPGG
IAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID

Download         Length: 417 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6KMQ
PDB 5IFG
PDB 5YCL
PDB 6KML

Antitoxin

Source ID Structure

References