Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 796327..796829 Replicon chromosome
Accession NZ_CP124410
Organism Escherichia coli strain AVS0543

Toxin (Protein)


Gene name yoeB Uniprot ID E2QNP2
Locus tag QJP61_RS04120 Protein ID WP_000767819.1
Coordinates 796327..796581 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID E2QNP3
Locus tag QJP61_RS04125 Protein ID WP_001259253.1
Coordinates 796578..796829 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJP61_RS04095 (792145) 792145..792603 - 459 WP_001531805.1 IS200/IS605-like element IS200C family transposase -
QJP61_RS04100 (792820) 792820..794178 - 1359 WP_000019194.1 putrescine/proton symporter PlaP -
QJP61_RS04105 (794168) 794168..794230 - 63 WP_010723108.1 membrane protein YoeI -
QJP61_RS04110 (794445) 794445..795374 - 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
QJP61_RS04115 (795420) 795420..796244 - 825 WP_000754737.1 SDR family oxidoreductase -
QJP61_RS04120 (796327) 796327..796581 - 255 WP_000767819.1 type II toxin-antitoxin system mRNA interferase toxin YoeB Toxin
QJP61_RS04125 (796578) 796578..796829 - 252 WP_001259253.1 YoeB-YefM toxin-antitoxin system antitoxin YefM Antitoxin
QJP61_RS04130 (797112) 797112..797162 + 51 WP_001364200.1 his operon leader peptide -
QJP61_RS04135 (797308) 797308..798207 + 900 WP_000131782.1 ATP phosphoribosyltransferase -
QJP61_RS04140 (798213) 798213..799517 + 1305 WP_001296211.1 histidinol dehydrogenase -
QJP61_RS04145 (799514) 799514..800584 + 1071 WP_000108967.1 histidinol-phosphate transaminase -
QJP61_RS04150 (800584) 800584..801651 + 1068 WP_000080057.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(2-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10110.53 Da        Isoelectric Point: 7.2749

>T280084 WP_000767819.1 NZ_CP124410:c796581-796327 [Escherichia coli]
VKLIWSEESWDDYLYWQEADKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHLLVYAVTDDSLLIAAC
RYHY

Download         Length: 255 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9365.62 Da        Isoelectric Point: 4.6127

>AT280084 WP_001259253.1 NZ_CP124410:c796829-796578 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSDKGTEKD
IIE

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB E2QNP2

Antitoxin

Source ID Structure
AlphaFold DB E2QNP3

References