Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HTH_XRE
Location 4023398..4024077 Replicon chromosome
Accession NZ_CP124405
Organism Escherichia coli strain AVS0935

Toxin (Protein)


Gene name higB Uniprot ID S1PK60
Locus tag QJB05_RS19270 Protein ID WP_000057523.1
Coordinates 4023398..4023700 (+) Length 101 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID S1QAY3
Locus tag QJB05_RS19275 Protein ID WP_000806442.1
Coordinates 4023736..4024077 (+) Length 114 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJB05_RS19245 (4018774) 4018774..4020426 + 1653 WP_000771748.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
QJB05_RS19250 (4020464) 4020464..4020967 - 504 WP_000667000.1 hypothetical protein -
QJB05_RS19255 (4020964) 4020964..4021764 - 801 WP_000439798.1 hypothetical protein -
QJB05_RS19260 (4021788) 4021788..4022267 - 480 WP_000186633.1 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK -
QJB05_RS19265 (4022471) 4022471..4023265 - 795 WP_000365147.1 TraB/GumN family protein -
QJB05_RS19270 (4023398) 4023398..4023700 + 303 WP_000057523.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QJB05_RS19275 (4023736) 4023736..4024077 + 342 WP_000806442.1 HigA family addiction module antitoxin Antitoxin
QJB05_RS19280 (4024135) 4024135..4026639 - 2505 WP_000083947.1 copper-exporting P-type ATPase CopA -
QJB05_RS19285 (4026901) 4026901..4027833 + 933 WP_000883041.1 glutaminase A -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(9-98)

Antitoxin

Toxin-antitoxin system, antidote protein, HigA

(1-100)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11809.44 Da        Isoelectric Point: 10.3980

>T280063 WP_000057523.1 NZ_CP124405:4023398-4023700 [Escherichia coli]
MAQKKNIRSFRDAWLADFFVHSTPHRKIPAEIHTTLSRKLDIINAATSHRDLRSPPGNRYEELSGKLQEYSSIRVNKQYR
LIFKWVNGKAEELFLDPHNY

Download         Length: 303 bp

Antitoxin


Download         Length: 114 a.a.        Molecular weight: 13171.10 Da        Isoelectric Point: 5.7790

>AT280063 WP_000806442.1 NZ_CP124405:4023736-4024077 [Escherichia coli]
MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLW
EVENNMRTQEELGRIETVAEYLARREERAKKVA

Download         Length: 342 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1PK60

Antitoxin

Source ID Structure
PDB 2EBY
AlphaFold DB S1QAY3

References