Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 3603409..3604136 Replicon chromosome
Accession NZ_CP124334
Organism Escherichia coli strain AVS0786

Toxin (Protein)


Gene name higB Uniprot ID U9ZMR4
Locus tag QJP89_RS17685 Protein ID WP_000550189.1
Coordinates 3603409..3603723 (+) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag QJP89_RS17690 Protein ID WP_000560269.1
Coordinates 3603720..3604136 (+) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJP89_RS17665 (3599566) 3599566..3600552 - 987 WP_001385498.1 Gfo/Idh/MocA family oxidoreductase -
QJP89_RS17670 (3600631) 3600631..3601323 - 693 WP_000942551.1 vancomycin high temperature exclusion protein -
QJP89_RS17675 (3601400) 3601400..3601903 - 504 WP_001295542.1 M48 family metallopeptidase -
QJP89_RS17680 (3601988) 3601988..3603124 + 1137 WP_000018703.1 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG -
QJP89_RS17685 (3603409) 3603409..3603723 + 315 WP_000550189.1 type II toxin-antitoxin system toxin HigB Toxin
QJP89_RS17690 (3603720) 3603720..3604136 + 417 WP_000560269.1 type II toxin-antitoxin system antitoxin HigA Antitoxin
QJP89_RS17695 (3604181) 3604181..3606199 - 2019 WP_000121413.1 NADPH-dependent 2,4-dienoyl-CoA reductase -
QJP89_RS17700 (3606425) 3606425..3608776 - 2352 WP_282517599.1 alpha-glucosidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, mRNA interferase HigB

(20-92)

Antitoxin

Cro/C1-type helix-turn-helix domain

(84-135)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 12103.10 Da        Isoelectric Point: 10.0409

>T279528 WP_000550189.1 NZ_CP124334:3603409-3603723 [Escherichia coli]
MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK

Download         Length: 315 bp

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15023.47 Da        Isoelectric Point: 4.4547

>AT279528 WP_000560269.1 NZ_CP124334:3603720-3604136 [Escherichia coli]
MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAWEESAPEFVEFNAMAQAMPGG
IAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID

Download         Length: 417 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6KMQ
PDB 5IFG
PDB 5YCL
PDB 6KML

Antitoxin

Source ID Structure

References