Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 2010744..2011246 Replicon chromosome
Accession NZ_CP124322
Organism Escherichia coli strain AVS0717

Toxin (Protein)


Gene name yoeB Uniprot ID S1P977
Locus tag QJB10_RS09595 Protein ID WP_000767822.1
Coordinates 2010992..2011246 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID S1Q063
Locus tag QJB10_RS09590 Protein ID WP_001259255.1
Coordinates 2010744..2010995 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJB10_RS09565 (2005922) 2005922..2006989 - 1068 WP_000080105.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB -
QJB10_RS09570 (2006989) 2006989..2008059 - 1071 WP_000108941.1 histidinol-phosphate transaminase -
QJB10_RS09575 (2008056) 2008056..2009360 - 1305 WP_001546022.1 histidinol dehydrogenase -
QJB10_RS09580 (2009366) 2009366..2010265 - 900 WP_000131782.1 ATP phosphoribosyltransferase -
QJB10_RS09585 (2010411) 2010411..2010461 - 51 WP_001364200.1 his operon leader peptide -
QJB10_RS09590 (2010744) 2010744..2010995 + 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM Antitoxin
QJB10_RS09595 (2010992) 2010992..2011246 + 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB Toxin
QJB10_RS09600 (2011329) 2011329..2012153 + 825 WP_000754737.1 SDR family oxidoreductase -
QJB10_RS09605 (2012199) 2012199..2013128 + 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
QJB10_RS09610 (2013343) 2013343..2013405 + 63 WP_010723108.1 membrane protein YoeI -
QJB10_RS09615 (2013395) 2013395..2014753 + 1359 WP_000019194.1 putrescine/proton symporter PlaP -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10183.58 Da        Isoelectric Point: 8.0353

>T279377 WP_000767822.1 NZ_CP124322:2010992-2011246 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINEIIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY

Download         Length: 255 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9307.58 Da        Isoelectric Point: 4.7954

>AT279377 WP_001259255.1 NZ_CP124322:2010744-2010995 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1P977

Antitoxin

Source ID Structure
PDB 2A6Q
AlphaFold DB A0A7U9LNR0

References