Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/-
Location 1299146..1299801 Replicon chromosome
Accession NZ_CP124219
Organism Pseudomonas sp. P13

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag QFW95_RS05745 Protein ID WP_274089993.1
Coordinates 1299146..1299490 (+) Length 115 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag QFW95_RS05750 Protein ID WP_274089992.1
Coordinates 1299487..1299801 (+) Length 105 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QFW95_RS05720 1294161..1295108 + 948 WP_047228600.1 ubiquinol oxidase subunit II -
QFW95_RS05725 1295112..1297142 + 2031 WP_047228599.1 cytochrome o ubiquinol oxidase subunit I -
QFW95_RS05730 1297146..1297772 + 627 WP_047228598.1 cytochrome o ubiquinol oxidase subunit III -
QFW95_RS05735 1297773..1298108 + 336 WP_025211927.1 cytochrome o ubiquinol oxidase subunit IV -
QFW95_RS05740 1298120..1299007 + 888 WP_047228597.1 heme o synthase -
QFW95_RS05745 1299146..1299490 + 345 WP_274089993.1 toxin Toxin
QFW95_RS05750 1299487..1299801 + 315 WP_274089992.1 helix-turn-helix domain-containing protein Antitoxin
QFW95_RS05755 1300145..1300849 - 705 WP_092456206.1 hypothetical protein -
QFW95_RS05760 1300988..1302001 - 1014 WP_047228595.1 diguanylate cyclase -
QFW95_RS05765 1302193..1303110 - 918 WP_047228594.1 LysR family transcriptional regulator -
QFW95_RS05770 1303209..1304384 + 1176 WP_076386553.1 aspartate aminotransferase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(42-94)


Sequences

Toxin        


Download         Length: 115 a.a.        Molecular weight: 13608.65 Da        Isoelectric Point: 9.6385

>T279328 WP_274089993.1 NZ_CP124219:1299146-1299490 [Pseudomonas sp. P13]
MRTLFFETTTFTATVGHYLTDDEYRLLQSYMLEHPEVGDVMPRTGGFRKLRWFDGRRGKGKRGGLRVIYYWLMNDRQFWM
FAIYDKDELVNLTSEQEKTLKRAIEAELKVRGTL

Download         Length: 345 bp

Antitoxin


Download         Length: 105 a.a.        Molecular weight: 11780.77 Da        Isoelectric Point: 9.8412

>AT279328 WP_274089992.1 NZ_CP124219:1299487-1299801 [Pseudomonas sp. P13]
MKKRDLFAEMMQGVEEMAAHREGKITLRHISIEDKPVPEVSAQEIVALRDKLHMSQAVFAKSIRTSPGTLRNWEQEKSKP
NAQAALLIKLVEKFPDMVERLGAV

Download         Length: 315 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References