Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/-
Location 1091302..1091957 Replicon chromosome
Accession NZ_CP123771
Organism Pseudomonas viciae strain YsS1

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag QCD61_RS04685 Protein ID WP_092223719.1
Coordinates 1091302..1091646 (+) Length 115 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag QCD61_RS04690 Protein ID WP_135843777.1
Coordinates 1091643..1091957 (+) Length 105 a.a.

Genomic Context

QCD61_RS04660QCD61_RS04665QCD61_RS04670QCD61_RS04675QCD61_RS04680QCD61_RS04685QCD61_RS04690QCD61_RS04710QCD61_RS04695QCD61_RS04700QCD61_RS04705
Location: 1086317..1087264 (948 bp)
Type: Others
Protein ID: WP_256454288.1
Location: 1087268..1089298 (2031 bp)
Type: Others
Protein ID: WP_135843774.1
Location: 1089302..1089928 (627 bp)
Type: Others
Protein ID: WP_135843775.1
Location: 1089929..1090264 (336 bp)
Type: Others
Protein ID: WP_025211927.1
Location: 1090276..1091163 (888 bp)
Type: Others
Protein ID: WP_135843776.1
Location: 1091302..1091646 (345 bp)
Type: Toxin
Protein ID: WP_092223719.1
Location: 1091643..1091957 (315 bp)
Type: Antitoxin
Protein ID: WP_135843777.1
Location: 1095059..1096234 (1176 bp)
Type: Others
Protein ID: WP_265072718.1
Location: 1092066..1092770 (705 bp)
Type: Others
Protein ID: WP_135843778.1
Location: 1092930..1093943 (1014 bp)
Type: Others
Protein ID: WP_135843779.1
Location: 1094043..1094960 (918 bp)
Type: Others
Protein ID: WP_280944699.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
QCD61_RS04660 (QCD61_04660)1086317..1087264+948WP_256454288.1ubiquinol oxidase subunit II-
QCD61_RS04665 (QCD61_04665)1087268..1089298+2031WP_135843774.1cytochrome o ubiquinol oxidase subunit I-
QCD61_RS04670 (QCD61_04670)1089302..1089928+627WP_135843775.1cytochrome o ubiquinol oxidase subunit III-
QCD61_RS04675 (QCD61_04675)1089929..1090264+336WP_025211927.1cytochrome o ubiquinol oxidase subunit IV-
QCD61_RS04680 (QCD61_04680)1090276..1091163+888WP_135843776.1heme o synthase-
QCD61_RS04685 (QCD61_04685)1091302..1091646+345WP_092223719.1toxinToxin
QCD61_RS04690 (QCD61_04690)1091643..1091957+315WP_135843777.1helix-turn-helix domain-containing proteinAntitoxin
QCD61_RS04695 (QCD61_04695)1092066..1092770-705WP_135843778.1hypothetical protein-
QCD61_RS04700 (QCD61_04700)1092930..1093943-1014WP_135843779.1sensor domain-containing diguanylate cyclase-
QCD61_RS04705 (QCD61_04705)1094043..1094960-918WP_280944699.1LysR family transcriptional regulator-
QCD61_RS04710 (QCD61_04710)1095059..1096234+1176WP_265072718.1aspartate aminotransferase family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(42-94)


Sequences

Toxin        


Download         Length: 115 a.a.        Molecular weight: 13709.71 Da        Isoelectric Point: 9.2887

>T279146 WP_092223719.1 NZ_CP123771:1091302-1091646 [Pseudomonas viciae]
MRTLFFETTTFTATVGHYLTDDEYRLLQSYMLQHPEVGDVMPRTGGFRKLRWFDERRGKGKRGGLRVIYYWLMNDRQFWM
FAIYDKDELENLTSEQEKTLKRAIEAELKVRGTL

Download         Length: 345 bp

Antitoxin


Download         Length: 105 a.a.        Molecular weight: 11731.65 Da        Isoelectric Point: 9.8409

>AT279146 WP_135843777.1 NZ_CP123771:1091643-1091957 [Pseudomonas viciae]
MKKRDLFAEMMQGVEEMAAHREGKITLRQTSIEDKPAPEVSAQEIVALRDKLHMSQAVFAKSIRTSPGTLRNWEQEKSKP
NAQAALLIKLVEKFPDMVERLGAV

Download         Length: 315 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References