Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/-
Location 1091302..1091957 Replicon chromosome
Accession NZ_CP123771
Organism Pseudomonas viciae strain YsS1

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag QCD61_RS04685 Protein ID WP_092223719.1
Coordinates 1091302..1091646 (+) Length 115 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag QCD61_RS04690 Protein ID WP_135843777.1
Coordinates 1091643..1091957 (+) Length 105 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QCD61_RS04660 (QCD61_04660) 1086317..1087264 + 948 WP_256454288.1 ubiquinol oxidase subunit II -
QCD61_RS04665 (QCD61_04665) 1087268..1089298 + 2031 WP_135843774.1 cytochrome o ubiquinol oxidase subunit I -
QCD61_RS04670 (QCD61_04670) 1089302..1089928 + 627 WP_135843775.1 cytochrome o ubiquinol oxidase subunit III -
QCD61_RS04675 (QCD61_04675) 1089929..1090264 + 336 WP_025211927.1 cytochrome o ubiquinol oxidase subunit IV -
QCD61_RS04680 (QCD61_04680) 1090276..1091163 + 888 WP_135843776.1 heme o synthase -
QCD61_RS04685 (QCD61_04685) 1091302..1091646 + 345 WP_092223719.1 toxin Toxin
QCD61_RS04690 (QCD61_04690) 1091643..1091957 + 315 WP_135843777.1 helix-turn-helix domain-containing protein Antitoxin
QCD61_RS04695 (QCD61_04695) 1092066..1092770 - 705 WP_135843778.1 hypothetical protein -
QCD61_RS04700 (QCD61_04700) 1092930..1093943 - 1014 WP_135843779.1 sensor domain-containing diguanylate cyclase -
QCD61_RS04705 (QCD61_04705) 1094043..1094960 - 918 WP_280944699.1 LysR family transcriptional regulator -
QCD61_RS04710 (QCD61_04710) 1095059..1096234 + 1176 WP_265072718.1 aspartate aminotransferase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(42-94)


Sequences

Toxin        


Download         Length: 115 a.a.        Molecular weight: 13709.71 Da        Isoelectric Point: 9.2887

>T279146 WP_092223719.1 NZ_CP123771:1091302-1091646 [Pseudomonas viciae]
MRTLFFETTTFTATVGHYLTDDEYRLLQSYMLQHPEVGDVMPRTGGFRKLRWFDERRGKGKRGGLRVIYYWLMNDRQFWM
FAIYDKDELENLTSEQEKTLKRAIEAELKVRGTL

Download         Length: 345 bp

Antitoxin


Download         Length: 105 a.a.        Molecular weight: 11731.65 Da        Isoelectric Point: 9.8409

>AT279146 WP_135843777.1 NZ_CP123771:1091643-1091957 [Pseudomonas viciae]
MKKRDLFAEMMQGVEEMAAHREGKITLRQTSIEDKPAPEVSAQEIVALRDKLHMSQAVFAKSIRTSPGTLRNWEQEKSKP
NAQAALLIKLVEKFPDMVERLGAV

Download         Length: 315 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References