Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/RelE-HTH |
Location | 3224..3809 | Replicon | plasmid pAP8900-4 |
Accession | NZ_CP123769 | ||
Organism | Acinetobacter pittii strain AP8900 |
Toxin (Protein)
Gene name | higB | Uniprot ID | - |
Locus tag | QFB56_RS20260 | Protein ID | WP_199953181.1 |
Coordinates | 3489..3809 (-) | Length | 107 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | QFB56_RS20255 | Protein ID | WP_094069338.1 |
Coordinates | 3224..3496 (-) | Length | 91 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
QFB56_RS20225 (QFB56_20225) | 536..727 | + | 192 | WP_000102616.1 | hypothetical protein | - |
QFB56_RS20230 (QFB56_20230) | 770..1168 | - | 399 | WP_024437500.1 | hypothetical protein | - |
QFB56_RS20235 (QFB56_20235) | 1190..1525 | - | 336 | WP_159452829.1 | hypothetical protein | - |
QFB56_RS20240 (QFB56_20240) | 1667..1912 | + | 246 | WP_000246755.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
QFB56_RS20245 (QFB56_20245) | 1902..2195 | + | 294 | WP_000221358.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
QFB56_RS20250 (QFB56_20250) | 2423..2740 | + | 318 | WP_005065053.1 | hypothetical protein | - |
QFB56_RS20255 (QFB56_20255) | 3224..3496 | - | 273 | WP_094069338.1 | NadS family protein | Antitoxin |
QFB56_RS20260 (QFB56_20260) | 3489..3809 | - | 321 | WP_199953181.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
QFB56_RS20265 (QFB56_20265) | 3968..4747 | + | 780 | WP_199953180.1 | pentapeptide repeat-containing protein | - |
QFB56_RS20270 (QFB56_20270) | 4934..5794 | + | 861 | WP_199953179.1 | restriction endonuclease | - |
QFB56_RS20275 (QFB56_20275) | 5911..6522 | - | 612 | WP_199953178.1 | recombinase family protein | - |
QFB56_RS20280 (QFB56_20280) | 6703..7230 | - | 528 | WP_000537572.1 | plasmid pRiA4b ORF-3 family protein | - |
QFB56_RS20285 (QFB56_20285) | 7325..7639 | - | 315 | WP_005086327.1 | BrnA antitoxin family protein | - |
QFB56_RS20290 (QFB56_20290) | 7602..7913 | - | 312 | WP_005086328.1 | BrnT family toxin | - |
QFB56_RS20295 (QFB56_20295) | 8147..8593 | - | 447 | WP_006581726.1 | GNAT family N-acetyltransferase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | - | 1..11346 | 11346 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 107 a.a. Molecular weight: 12223.04 Da Isoelectric Point: 7.9835
>T279144 WP_199953181.1 NZ_CP123769:c3809-3489 [Acinetobacter pittii]
MLFIETSIFTKQIKELVSDEEYRQLQQDLLVQPDKGDLIKNGGGIRKVRCAQGNKGKSGGIRVIYYWVTEDDQIFFLIAY
PKSVKDNLTDKETSILRQLVKEQFHG
MLFIETSIFTKQIKELVSDEEYRQLQQDLLVQPDKGDLIKNGGGIRKVRCAQGNKGKSGGIRVIYYWVTEDDQIFFLIAY
PKSVKDNLTDKETSILRQLVKEQFHG
Download Length: 321 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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