Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 2037695..2038200 Replicon chromosome
Accession NZ_CP123759
Organism Arsenophonus apicola strain aApi_AU

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag QG404_RS10310 Protein ID WP_280937458.1
Coordinates 2037943..2038200 (+) Length 86 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag QG404_RS10305 Protein ID WP_280937457.1
Coordinates 2037695..2037946 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QG404_RS10295 (QG404_10300) 2034250..2036886 + 2637 WP_280937455.1 S-type pyocin domain-containing protein -
QG404_RS10300 (QG404_10305) 2036888..2037145 + 258 WP_280551709.1 bacteriocin immunity protein -
QG404_RS10305 (QG404_10310) 2037695..2037946 + 252 WP_280937457.1 YoeB-YefM toxin-antitoxin system antitoxin YefM Antitoxin
QG404_RS10310 (QG404_10315) 2037943..2038200 + 258 WP_280937458.1 Txe/YoeB family addiction module toxin Toxin
QG404_RS10315 (QG404_10320) 2038459..2039751 - 1293 WP_280937459.1 serine--tRNA ligase -
QG404_RS10320 (QG404_10325) 2039861..2041204 - 1344 WP_280939841.1 replication-associated recombination protein A -
QG404_RS10325 (QG404_10330) 2041206..2041823 - 618 WP_280937460.1 outer membrane lipoprotein chaperone LolA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 10395.04 Da        Isoelectric Point: 10.0998

>T279135 WP_280937458.1 NZ_CP123759:2037943-2038200 [Arsenophonus apicola]
MKLIFTEQSWNDYLYRQQIDKKIIKRINELIKDIKREPFSGIGKPEPLKHNLTGFWSRRITEEHRLIYRLTDKGLEIASC
RYHYN

Download         Length: 258 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9443.77 Da        Isoelectric Point: 4.5858

>AT279135 WP_280937457.1 NZ_CP123759:2037695-2037946 [Arsenophonus apicola]
MKTVNYTDARQNLTSIMNEAIDDRIPILITRQKGIPCVLLSLDEYQSLEETAYLLRSPANARHLLDSIDELNVGKGIERD
IKE

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References