Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 271347..271983 Replicon chromosome
Accession NZ_CP123352
Organism Agrobacterium pusense strain GV2

Toxin (Protein)


Gene name graT Uniprot ID -
Locus tag QE155_RS14470 Protein ID WP_280170931.1
Coordinates 271702..271983 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name graA Uniprot ID -
Locus tag QE155_RS14465 Protein ID WP_004444714.1
Coordinates 271347..271646 (-) Length 100 a.a.

Genomic Context

QE155_RS14460QE155_RS14440QE155_RS14445QE155_RS14450QE155_RS14455QE155_RS14465QE155_RS14470QE155_RS14475QE155_RS14480QE155_RS14485QE155_RS14490
Location: 270455..271327 (873 bp)
Type: Others
Protein ID: WP_280170930.1
Location: 266535..267263 (729 bp)
Type: Others
Protein ID: WP_280170927.1
Location: 267260..268168 (909 bp)
Type: Others
Protein ID: WP_035208323.1
Location: 268165..269037 (873 bp)
Type: Others
Protein ID: WP_280170928.1
Location: 269108..270322 (1215 bp)
Type: Others
Protein ID: WP_280170929.1
Location: 271347..271646 (300 bp)
Type: Antitoxin
Protein ID: WP_004444714.1
Location: 271702..271983 (282 bp)
Type: Toxin
Protein ID: WP_280170931.1
Location: 272061..272867 (807 bp)
Type: Others
Protein ID: WP_280170932.1
Location: 272864..273898 (1035 bp)
Type: Others
Protein ID: WP_280170933.1
Location: 273901..274944 (1044 bp)
Type: Others
Protein ID: WP_280170934.1
Location: 274941..275948 (1008 bp)
Type: Others
Protein ID: WP_280170935.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
QE155_RS14440266535..267263-729WP_280170927.1ABC transporter ATP-binding protein-
QE155_RS14445267260..268168-909WP_035208323.1branched-chain amino acid ABC transporter permease-
QE155_RS14450268165..269037-873WP_280170928.1branched-chain amino acid ABC transporter permease-
QE155_RS14455269108..270322-1215WP_280170929.1amino acid ABC transporter substrate-binding protein-
QE155_RS14460270455..271327+873WP_280170930.1helix-turn-helix transcriptional regulator-
QE155_RS14465271347..271646-300WP_004444714.1HigA family addiction module antitoxinAntitoxin
QE155_RS14470271702..271983-282WP_280170931.1type II toxin-antitoxin system RelE/ParE family toxinToxin
QE155_RS14475272061..272867-807WP_280170932.1ABC transporter ATP-binding protein-
QE155_RS14480272864..273898-1035WP_280170933.1iron chelate uptake ABC transporter family permease subunit-
QE155_RS14485273901..274944-1044WP_280170934.1iron ABC transporter permease-
QE155_RS14490274941..275948-1008WP_280170935.1iron-siderophore ABC transporter substrate-binding protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(4-93)

Antitoxin

Cro/C1-type helix-turn-helix domain

(19-70)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10637.07 Da        Isoelectric Point: 9.0298

>T278938 WP_280170931.1 NZ_CP123352:c271983-271702 [Agrobacterium pusense]
MIRSFKNKLTASIDDGSVKKGFPSDMLRRAQQLLTILDAANTVEDLRSPPGNRLEKLSGDREGQYSIRINKQWRICFVWT
QAGPENVEITDYH

Download         Length: 282 bp

Antitoxin


Download         Length: 100 a.a.        Molecular weight: 11060.86 Da        Isoelectric Point: 8.5148

>AT278938 WP_004444714.1 NZ_CP123352:c271646-271347 [Agrobacterium pusense]
MTISKSPPIHPGEILRELYLEPLGMSAYALARHLNVPRTRIERIAGEKLGITADTALRLAKFFKTTPEYWLNLQNAFDIK
AAAARLETDLANIKELEAA

Download         Length: 300 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References