Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | DinJ-YafQ (relBE)/YafQ-RelB |
| Location | 4012043..4012584 | Replicon | chromosome |
| Accession | NZ_CP122880 | ||
| Organism | Escherichia coli strain ETEC1716 | ||
Toxin (Protein)
| Gene name | yafQ | Uniprot ID | Q47149 |
| Locus tag | QDX09_RS20165 | Protein ID | WP_000615983.1 |
| Coordinates | 4012306..4012584 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | dinJ | Uniprot ID | Q47150 |
| Locus tag | QDX09_RS20160 | Protein ID | WP_000729703.1 |
| Coordinates | 4012043..4012303 (+) | Length | 87 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDX09_RS20140 (4007718) | 4007718..4008503 | - | 786 | WP_000207552.1 | putative lateral flagellar export/assembly protein LafU | - |
| QDX09_RS20145 (4008475) | 4008475..4010187 | + | 1713 | Protein_3944 | flagellar biosynthesis protein FlhA | - |
| QDX09_RS20150 (4010411) | 4010411..4010908 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| QDX09_RS20155 (4011084) | 4011084..4011833 | - | 750 | WP_000056849.1 | C40 family peptidase | - |
| QDX09_RS20160 (4012043) | 4012043..4012303 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin |
| QDX09_RS20165 (4012306) | 4012306..4012584 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin |
| QDX09_RS20170 (4012740) | 4012740..4013480 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| QDX09_RS20175 (4013451) | 4013451..4014218 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| QDX09_RS20180 (4014424) | 4014424..4015002 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | gmhA/lpcA / rhs/PAAR / clpV/tssH / tssA / tssA / hcp1/tssD1 | 4005845..4043876 | 38031 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|