Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 1886271..1886773 Replicon chromosome
Accession NZ_CP122629
Organism Escherichia coli strain ETEC4088

Toxin (Protein)


Gene name yoeB Uniprot ID U9YDH0
Locus tag QDW58_RS09080 Protein ID WP_000767829.1
Coordinates 1886519..1886773 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID S1Q063
Locus tag QDW58_RS09075 Protein ID WP_001259255.1
Coordinates 1886271..1886522 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QDW58_RS09050 (1881449) 1881449..1882516 - 1068 WP_000080134.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB -
QDW58_RS09055 (1882516) 1882516..1883586 - 1071 WP_023308085.1 histidinol-phosphate transaminase -
QDW58_RS09060 (1883583) 1883583..1884887 - 1305 WP_001300646.1 histidinol dehydrogenase -
QDW58_RS09065 (1884893) 1884893..1885792 - 900 WP_000131782.1 ATP phosphoribosyltransferase -
QDW58_RS09070 (1885938) 1885938..1885988 - 51 WP_001364200.1 his operon leader peptide -
QDW58_RS09075 (1886271) 1886271..1886522 + 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM Antitoxin
QDW58_RS09080 (1886519) 1886519..1886773 + 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB Toxin
QDW58_RS09085 (1886856) 1886856..1887680 + 825 WP_000754737.1 SDR family oxidoreductase -
QDW58_RS09090 (1887726) 1887726..1888655 + 930 WP_098723280.1 LysR substrate-binding domain-containing protein -
QDW58_RS09095 (1888870) 1888870..1888932 + 63 WP_010723108.1 membrane protein YoeI -
QDW58_RS09100 (1888922) 1888922..1890280 + 1359 WP_000019197.1 putrescine/proton symporter PlaP -
QDW58_RS09105 (1890459) 1890459..1891517 + 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
QDW58_RS09110 (1891531) 1891531..1891758 + 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(2-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10183.58 Da        Isoelectric Point: 8.0353

>T277412 WP_000767829.1 NZ_CP122629:1886519-1886773 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY

Download         Length: 255 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9307.58 Da        Isoelectric Point: 4.7954

>AT277412 WP_001259255.1 NZ_CP122629:1886271-1886522 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6NY6
PDB 2A6S
PDB 6OXA
PDB 2A6R
PDB 4V8X
PDB 6OTR
PDB 6OXI
PDB 2A6Q

Antitoxin

Source ID Structure
PDB 2A6Q
AlphaFold DB A0A7U9LNR0

References