Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) hok-sok/-
Location 4169196..4169454 Replicon chromosome
Accession NZ_CP122448
Organism Escherichia coli strain 85.0412

Toxin (Protein)


Gene name hokC Uniprot ID S1NX00
Locus tag QBY77_RS20115 Protein ID WP_000809168.1
Coordinates 4169302..4169454 (+) Length 51 a.a.

Antitoxin (RNA)


Gene name sokC
Locus tag -
Coordinates 4169196..4169253 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QBY77_RS20100 4165025..4166284 - 1260 WP_000494927.1 hypothetical protein -
QBY77_RS20105 4166413..4167906 - 1494 WP_001314416.1 sulfatase-like hydrolase/transferase -
QBY77_RS20110 4167926..4168687 - 762 WP_001274828.1 outer membrane protein OmpK -
- 4169196..4169253 - 58 - - Antitoxin
QBY77_RS20115 4169302..4169454 + 153 WP_000809168.1 type I toxin-antitoxin system toxin MokC Toxin
QBY77_RS20120 4169559..4170689 - 1131 WP_001118464.1 molecular chaperone DnaJ -
QBY77_RS20125 4170778..4172694 - 1917 WP_000516135.1 molecular chaperone DnaK -
QBY77_RS20130 4173066..4173470 + 405 WP_000843689.1 DUF2541 family protein -
QBY77_RS20135 4173496..4174209 + 714 WP_001102393.1 acidic protein MsyB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Hok/gef cell toxic protein

(6-47)


Sequences

Toxin        


Download         Length: 51 a.a.        Molecular weight: 5501.57 Da        Isoelectric Point: 7.1312

>T276884 WP_000809168.1 NZ_CP122448:4169302-4169454 [Escherichia coli]
MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE

Download         Length: 153 bp

Antitoxin


Download         Length: 58 bp

>AT276884 NZ_CP122448:c4169253-4169196 [Escherichia coli]
GTTCTGCATATAGGGGGCCTCGGGTTGATGGTAAAATATCACTCGGGGCTTTTCTCTA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1NX00

Antitoxin

Download structure file

References