Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | prlF-yhaV (relBE)/YhaV-PrlF |
Location | 160512..161333 | Replicon | plasmid pPAG02 |
Accession | NZ_CP122321 | ||
Organism | Pantoea agglomerans pv. gypsophilae strain 824-1 |
Toxin (Protein)
Gene name | yhaV | Uniprot ID | - |
Locus tag | A7P62_RS20120 | Protein ID | WP_064690735.1 |
Coordinates | 160863..161333 (+) | Length | 157 a.a. |
Antitoxin (Protein)
Gene name | prlF | Uniprot ID | A0A8X8DUC8 |
Locus tag | A7P62_RS20115 | Protein ID | WP_033773852.1 |
Coordinates | 160512..160856 (+) | Length | 115 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
A7P62_RS20095 (A7P62_20095) | 156512..157621 | + | 1110 | WP_064690732.1 | maltose/maltodextrin ABC transporter ATP-binding protein MalK | - |
A7P62_RS20100 (A7P62_20100) | 157665..158966 | + | 1302 | WP_033760237.1 | maltoporin | - |
A7P62_RS20105 (A7P62_20105) | 159069..160007 | + | 939 | WP_064690733.1 | maltose operon protein MalM | - |
A7P62_RS20110 (A7P62_20110) | 160197..160412 | + | 216 | WP_064690734.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
A7P62_RS20115 (A7P62_20115) | 160512..160856 | + | 345 | WP_033773852.1 | type II toxin-antitoxin system PrlF family antitoxin | Antitoxin |
A7P62_RS20120 (A7P62_20120) | 160863..161333 | + | 471 | WP_064690735.1 | type II toxin-antitoxin system YhaV family toxin | Toxin |
A7P62_RS20125 (A7P62_20125) | 161521..163596 | - | 2076 | WP_064690736.1 | 4-alpha-glucanotransferase | - |
A7P62_RS20130 (A7P62_20130) | 163605..166007 | - | 2403 | WP_064690737.1 | maltodextrin phosphorylase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | hcp/tssD | 1..582658 | 582658 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 157 a.a. Molecular weight: 18304.92 Da Isoelectric Point: 9.2814
>T276792 WP_064690735.1 NZ_CP122321:160863-161333 [Pantoea agglomerans pv. gypsophilae]
MEDSTVINGWHVYVHPCFESQLIALTNEVELLRAKYPESYQRKATTKLLAAVFKVINSEICADPHQAKFRQGDTLGEQNK
HWFRAKFLMQYRLFFRFSEQHKTIILAWMNDAETKRAYGSKRDAYKVFSGMLHNGYPPDDWALLLKQSQDWAKINS
MEDSTVINGWHVYVHPCFESQLIALTNEVELLRAKYPESYQRKATTKLLAAVFKVINSEICADPHQAKFRQGDTLGEQNK
HWFRAKFLMQYRLFFRFSEQHKTIILAWMNDAETKRAYGSKRDAYKVFSGMLHNGYPPDDWALLLKQSQDWAKINS
Download Length: 471 bp
Antitoxin
Download Length: 115 a.a. Molecular weight: 12285.96 Da Isoelectric Point: 4.3278
>AT276792 WP_033773852.1 NZ_CP122321:160512-160856 [Pantoea agglomerans pv. gypsophilae]
MGTLTHANISLRASSKLTARSQTTIPAAVRDAMNLQPGENIEYAVLPGGKVLITRQETVTDDDPVMASFLSFLAADIRNT
PANIKTLDRGLLTRITSLTEGMDVDLDAPLMDDE
MGTLTHANISLRASSKLTARSQTTIPAAVRDAMNLQPGENIEYAVLPGGKVLITRQETVTDDDPVMASFLSFLAADIRNT
PANIKTLDRGLLTRITSLTEGMDVDLDAPLMDDE
Download Length: 345 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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