Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) DinJ-YafQ (relBE)/YafQ-RelB
Location 2215280..2215821 Replicon chromosome
Accession NZ_CP122316
Organism Escherichia coli strain HT-946

Toxin (Protein)


Gene name yafQ Uniprot ID Q47149
Locus tag QCG48_RS10990 Protein ID WP_000615983.1
Coordinates 2215280..2215558 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID Q47150
Locus tag QCG48_RS10995 Protein ID WP_000729703.1
Coordinates 2215561..2215821 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QCG48_RS10975 (2212862) 2212862..2213440 + 579 WP_000284050.1 D-sedoheptulose 7-phosphate isomerase -
QCG48_RS10980 (2213646) 2213646..2214413 + 768 WP_000333380.1 class II glutamine amidotransferase -
QCG48_RS10985 (2214384) 2214384..2215124 - 741 WP_001225679.1 peptidoglycan meso-diaminopimelic acid protein amidase -
QCG48_RS10990 (2215280) 2215280..2215558 - 279 WP_000615983.1 type II toxin-antitoxin system mRNA interferase toxin YafQ Toxin
QCG48_RS10995 (2215561) 2215561..2215821 - 261 WP_000729703.1 type II toxin-antitoxin system antitoxin DinJ Antitoxin
QCG48_RS11000 (2216031) 2216031..2216780 + 750 WP_000056849.1 C40 family peptidase -
QCG48_RS11005 (2216956) 2216956..2217453 + 498 WP_000006255.1 REP-associated tyrosine transposase RayT -
QCG48_RS11010 (2217677) 2217677..2219389 - 1713 Protein_2144 flagellar biosynthesis protein FlhA -
QCG48_RS11015 (2219361) 2219361..2220146 + 786 WP_000207552.1 putative lateral flagellar export/assembly protein LafU -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(4-91)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-85)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10846.62 Da        Isoelectric Point: 9.9941

>T276670 WP_000615983.1 NZ_CP122316:c2215558-2215280 [Escherichia coli]
MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLR
FERTGTHAALFG

Download         Length: 279 bp

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9405.80 Da        Isoelectric Point: 5.0758

>AT276670 WP_000729703.1 NZ_CP122316:c2215821-2215561 [Escherichia coli]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGIDVHKAKDADDL
FDKLGI

Download         Length: 261 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4Q2U

Antitoxin

Source ID Structure
PDB 4Q2U
AlphaFold DB A0A5F1F716

References