Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 3664508..3665105 Replicon chromosome
Accession NZ_CP119566
Organism Pararhizobium sp. T808

Toxin (Protein)


Gene name graT Uniprot ID -
Locus tag PYR65_RS17985 Protein ID WP_276118964.1
Coordinates 3664824..3665105 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag PYR65_RS17980 Protein ID WP_276118963.1
Coordinates 3664508..3664807 (-) Length 100 a.a.

Genomic Context

PYR65_RS17960PYR65_RS18005PYR65_RS17965PYR65_RS17970PYR65_RS17975PYR65_RS17980PYR65_RS17985PYR65_RS17990PYR65_RS17995PYR65_RS18000
Location: 3660401..3660928 (528 bp)
Type: Others
Protein ID: WP_276118960.1
Location: 3669314..3669511 (198 bp)
Type: Others
Protein ID: WP_276118968.1
Location: 3661149..3661637 (489 bp)
Type: Others
Protein ID: WP_276118961.1
Location: 3661700..3662014 (315 bp)
Type: Others
Protein ID: WP_060636467.1
Location: 3662059..3664413 (2355 bp)
Type: Others
Protein ID: WP_276118962.1
Location: 3664508..3664807 (300 bp)
Type: Antitoxin
Protein ID: WP_276118963.1
Location: 3664824..3665105 (282 bp)
Type: Toxin
Protein ID: WP_276118964.1
Location: 3665201..3667144 (1944 bp)
Type: Others
Protein ID: WP_276118965.1
Location: 3667190..3668458 (1269 bp)
Type: Others
Protein ID: WP_276118966.1
Location: 3668559..3669107 (549 bp)
Type: Others
Protein ID: WP_276118967.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
PYR65_RS179603660401..3660928+528WP_276118960.1plant virulence effector HPE1-like domain-containing protein-
PYR65_RS179653661149..3661637-489WP_276118961.1DUF523 domain-containing protein-
PYR65_RS179703661700..3662014-315WP_060636467.1hypothetical protein-
PYR65_RS179753662059..3664413-2355WP_276118962.1glycine--tRNA ligase subunit beta-
PYR65_RS179803664508..3664807-300WP_276118963.1HigA family addiction module antitoxinAntitoxin
PYR65_RS179853664824..3665105-282WP_276118964.1type II toxin-antitoxin system RelE/ParE family toxinToxin
PYR65_RS179903665201..3667144-1944WP_276118965.1DUF2207 domain-containing protein-
PYR65_RS179953667190..3668458-1269WP_276118966.13-phosphoshikimate 1-carboxyvinyltransferase-
PYR65_RS180003668559..3669107-549WP_276118967.1LemA family protein-
PYR65_RS180053669314..3669511+198WP_276118968.1hypothetical protein-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(5-93)

Antitoxin

Toxin-antitoxin system, antidote protein, HigA

(7-93)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10403.89 Da        Isoelectric Point: 9.1862

>T274202 WP_276118964.1 NZ_CP119566:c3665105-3664824 [Pararhizobium sp. T808]
VIRSFKGKISAALADGSMKKGFPTDLVRRAQQLLVLLNAACDVKDLRSPPGNRLEKLSGDREGQYSIRINQQWRICFVWS
NGGADDVEIVDYH

Download         Length: 282 bp

Antitoxin


Download         Length: 100 a.a.        Molecular weight: 11130.86 Da        Isoelectric Point: 5.8701

>AT274202 WP_276118963.1 NZ_CP119566:c3664807-3664508 [Pararhizobium sp. T808]
MNDIGLPAIHPGEILKDLYLEPLDISAGTLAKKLNVPRTRIERIVTGKTGVTSDTALRLARFFDTTPELWMNLQVSYDLT
IEAERKRAEIERIPVRDAA

Download         Length: 300 bp


Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References