Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-RelB
Location 1870270..1870790 Replicon chromosome
Accession NZ_CP119409
Organism Rhizobium gei strain ZFJT.2T

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag PY308_RS09060 Protein ID WP_275790406.1
Coordinates 1870270..1870539 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag PY308_RS09065 Protein ID WP_275790409.1
Coordinates 1870536..1870790 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PY308_RS09035 1866037..1866969 - 933 WP_275790395.1 N-acetyl-gamma-glutamyl-phosphate reductase -
PY308_RS09040 1867061..1868017 - 957 WP_275790398.1 agmatinase -
PY308_RS09045 1868156..1868629 - 474 WP_275790401.1 30S ribosomal protein S9 -
PY308_RS09050 1868632..1869096 - 465 WP_275790403.1 50S ribosomal protein L13 -
PY308_RS09055 1869444..1870265 + 822 WP_275790404.1 enoyl-CoA hydratase -
PY308_RS09060 1870270..1870539 - 270 WP_275790406.1 Txe/YoeB family addiction module toxin Toxin
PY308_RS09065 1870536..1870790 - 255 WP_275790409.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
PY308_RS09070 1870844..1871680 - 837 WP_275790412.1 DMT family transporter -
PY308_RS09075 1871848..1872276 + 429 WP_275790413.1 CoA-binding protein -
PY308_RS09080 1872407..1873687 + 1281 WP_275790416.1 O-acetylhomoserine aminocarboxypropyltransferase -
PY308_RS09085 1873811..1874269 + 459 WP_275790419.1 MgtC/SapB family protein -
PY308_RS09090 1874378..1874722 + 345 WP_275790421.1 cupin domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10498.05 Da        Isoelectric Point: 9.8558

>T274130 WP_275790406.1 NZ_CP119409:c1870539-1870270 [Rhizobium gei]
VKVLFTGKSWDHYRSWAEADRTTLLRINMLIEDCRRTPFSGLGKPEPLRGELKGLWSRRINEEDRLVYRVSGKGETQTIE
LVACRYHYK

Download         Length: 270 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9589.93 Da        Isoelectric Point: 4.4777

>AT274130 WP_275790409.1 NZ_CP119409:c1870790-1870536 [Rhizobium gei]
MNVISFSELRANMAKHFDKVEEDHDELIVTRQNREPMVVMSLSDFESWKETMYLLSNPANARMLRASIAELDAGLGIEHA
LIDP

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References