Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) DinJ-YafQ (relBE)/YafQ-RelB
Location 245962..246503 Replicon chromosome
Accession NC_017638
Organism Escherichia coli DH1

Toxin (Protein)


Gene name yafQ Uniprot ID Q47149
Locus tag ECDH1ME8569_RS01150 Protein ID WP_000615983.1
Coordinates 245962..246240 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID Q47150
Locus tag ECDH1ME8569_RS01155 Protein ID WP_000729703.1
Coordinates 246243..246503 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ECDH1ME8569_RS01135 (ECDH1ME8569_0210) 243544..244122 + 579 WP_000284050.1 D-sedoheptulose 7-phosphate isomerase -
ECDH1ME8569_RS01140 (ECDH1ME8569_0211) 244328..245095 + 768 WP_000333380.1 class II glutamine amidotransferase -
ECDH1ME8569_RS01145 (ECDH1ME8569_0212) 245066..245806 - 741 WP_001225679.1 murein L,D-transpeptidase -
ECDH1ME8569_RS01150 (ECDH1ME8569_0213) 245962..246240 - 279 WP_000615983.1 type II toxin-antitoxin system mRNA interferase toxin YafQ Toxin
ECDH1ME8569_RS01155 (ECDH1ME8569_0214) 246243..246503 - 261 WP_000729703.1 type II toxin-antitoxin system antitoxin DinJ Antitoxin
ECDH1ME8569_RS01160 (ECDH1ME8569_0215) 246713..247462 + 750 WP_000056849.1 C40 family peptidase -
ECDH1ME8569_RS01165 (ECDH1ME8569_0216) 247638..248135 + 498 WP_000006255.1 REP-associated tyrosine transposase RayT -
ECDH1ME8569_RS01170 (ECDH1ME8569_0217) 248359..250071 - 1713 Protein_224 flagellar biosynthesis protein FlhA -
ECDH1ME8569_RS01175 (ECDH1ME8569_0218) 250043..250828 + 786 WP_000207552.1 putative lateral flagellar export/assembly protein LafU -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(4-91)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-85)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10846.62 Da        Isoelectric Point: 9.9941

>T27388 WP_000615983.1 NC_017638:c246240-245962 [Escherichia coli DH1]
MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLR
FERTGTHAALFG

Download         Length: 279 bp

>T27388 NC_017638:c246240-245962 [Escherichia coli DH1]
ATGATTCAAAGGGATATTGAATACTCGGGACAATATTCAAAGGATGTAAAACTTGCACAAAAGCGTCATAAGGATATGAA
TAAATTGAAATATCTTATGACGCTTCTTATCAATAATACTTTACCGCTTCCAGCTGTTTATAAAGACCACCCGCTGCAAG
GTTCATGGAAAGGTTATCGCGATGCTCATGTCGAACCGGACTGGATCCTGATTTACAAACTTACCGATAAACTTTTACGA
TTTGAGAGAACTGGAACTCACGCGGCGCTCTTTGGGTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9405.80 Da        Isoelectric Point: 5.0758

>AT27388 WP_000729703.1 NC_017638:c246503-246243 [Escherichia coli DH1]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGIDVHKAKDADDL
FDKLGI

Download         Length: 261 bp

>AT27388 NC_017638:c246503-246243 [Escherichia coli DH1]
ATGGCTGCTAACGCGTTTGTTCGCGCCCGAATCGATGAAGATCTGAAGAATCAGGCAGCGGACGTACTGGCCGGGATGGG
GCTGACCATCTCTGACCTGGTTCGCATAACCCTCACAAAGGTCGCGCGTGAAAAGGCATTGCCGTTTGATTTACGCGAGC
CTAATCAATTAACCATTCAATCAATCAAAAACAGCGAAGCTGGCATTGATGTTCATAAGGCCAAAGACGCCGATGATTTA
TTTGATAAATTAGGAATTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4Q2U

Antitoxin

Source ID Structure
PDB 4Q2U
AlphaFold DB A0A5F1F716

References