Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/-
Location 2784867..2785521 Replicon chromosome
Accession NZ_CP118142
Organism Pseudomonas chlororaphis strain ATCC 17809

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag PUP81_RS12810 Protein ID WP_124324922.1
Coordinates 2785171..2785521 (-) Length 117 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag PUP81_RS12805 Protein ID WP_124324923.1
Coordinates 2784867..2785181 (-) Length 105 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PUP81_RS12785 (PUP81_12785) 2780935..2781801 + 867 WP_124324924.1 sugar ABC transporter permease -
PUP81_RS12790 (PUP81_12790) 2781813..2782613 + 801 WP_007929618.1 carbohydrate ABC transporter permease -
PUP81_RS12795 (PUP81_12795) 2782624..2782896 + 273 WP_025804714.1 DUF2160 domain-containing protein -
PUP81_RS12800 (PUP81_12800) 2782947..2784689 + 1743 WP_025804713.1 ABC transporter substrate-binding protein -
PUP81_RS12805 (PUP81_12805) 2784867..2785181 - 315 WP_124324923.1 transcriptional regulator Antitoxin
PUP81_RS12810 (PUP81_12810) 2785171..2785521 - 351 WP_124324922.1 toxin Toxin
PUP81_RS12815 (PUP81_12815) 2785767..2787230 - 1464 WP_009049791.1 NADH-quinone oxidoreductase subunit NuoN -
PUP81_RS12820 (PUP81_12820) 2787238..2788770 - 1533 WP_053279911.1 NADH-quinone oxidoreductase subunit M -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(41-100)


Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 13791.76 Da        Isoelectric Point: 9.4187

>T272812 WP_124324922.1 NZ_CP118142:c2785521-2785171 [Pseudomonas chlororaphis]
MDALFIELPPFQRHRQDYLDDELFRSLQLELLKAPEAGDLIEGVGGLRKIRFVDERRHKGKRGGIRVIYYWWSGGAQFWL
FTLYAKNEQNDLTSHQKKLLKQLLNREVEARTHHET

Download         Length: 351 bp

Antitoxin


Download         Length: 105 a.a.        Molecular weight: 11921.84 Da        Isoelectric Point: 10.7886

>AT272812 WP_124324923.1 NZ_CP118142:c2785181-2784867 [Pseudomonas chlororaphis]
MKRDIFSELVEGFDTLAKERQGKLTLRTHKVKLNALLPITAEEVLAVREQLNLSRSVFAMYLRTNTRTLENWEQGRAKPN
AQATTLIRLVQRFPDTVERLAALA

Download         Length: 315 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References