Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/-
Location 4932145..4932799 Replicon chromosome
Accession NZ_CP118139
Organism Pseudomonas chlororaphis strain DSM 295781

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag PUP68_RS22045 Protein ID WP_231998601.1
Coordinates 4932145..4932495 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag PUP68_RS22050 Protein ID WP_053279913.1
Coordinates 4932485..4932799 (+) Length 105 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PUP68_RS22035 (PUP68_22035) 4928895..4930427 + 1533 WP_053279911.1 NADH-quinone oxidoreductase subunit M -
PUP68_RS22040 (PUP68_22040) 4930435..4931898 + 1464 WP_007929613.1 NADH-quinone oxidoreductase subunit NuoN -
PUP68_RS22045 (PUP68_22045) 4932145..4932495 + 351 WP_231998601.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PUP68_RS22050 (PUP68_22050) 4932485..4932799 + 315 WP_053279913.1 XRE family transcriptional regulator Antitoxin
PUP68_RS22055 (PUP68_22055) 4932976..4934718 - 1743 WP_274319878.1 ABC transporter substrate-binding protein -
PUP68_RS22060 (PUP68_22060) 4934769..4935041 - 273 WP_053279914.1 DUF2160 domain-containing protein -
PUP68_RS22065 (PUP68_22065) 4935052..4935852 - 801 WP_007929618.1 carbohydrate ABC transporter permease -
PUP68_RS22070 (PUP68_22070) 4935864..4936730 - 867 WP_053279915.1 sugar ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 13859.83 Da        Isoelectric Point: 9.3419

>T272798 WP_231998601.1 NZ_CP118139:4932145-4932495 [Pseudomonas chlororaphis]
MDALFIELPPFQRYRQDYLDDELFRSLQLELLKAPEAGDLIEGTGGLRKIRFVDERRHKGKRGGIRVIYYWWSGSAQFWL
FTLYAKNEQNDLTPHQKKLLKQLLNREVEARTHHET

Download         Length: 351 bp

Antitoxin


Download         Length: 105 a.a.        Molecular weight: 11903.87 Da        Isoelectric Point: 10.7886

>AT272798 WP_053279913.1 NZ_CP118139:4932485-4932799 [Pseudomonas chlororaphis]
MKRDIFSELVEGFDALAKERQGKLTLRTHKVKLNALLPITAEEVLAVREQLNLSRSVFAMYLRTNTRTLENWEQGRAKPN
AQATILIRLVQRFPDTVERLAALA

Download         Length: 315 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References