272791

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/-
Location 4931194..4931848 Replicon chromosome
Accession NZ_CP118138
Organism Pseudomonas chlororaphis strain DSM 295782

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag PUP77_RS22815 Protein ID WP_231998601.1
Coordinates 4931498..4931848 (-) Length 117 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag PUP77_RS22810 Protein ID WP_053279913.1
Coordinates 4931194..4931508 (-) Length 105 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PUP77_RS22790 (PUP77_22790) 4927263..4928129 + 867 WP_053279915.1 sugar ABC transporter permease -
PUP77_RS22795 (PUP77_22795) 4928141..4928941 + 801 WP_007929618.1 carbohydrate ABC transporter permease -
PUP77_RS22800 (PUP77_22800) 4928952..4929224 + 273 WP_053279914.1 DUF2160 domain-containing protein -
PUP77_RS22805 (PUP77_22805) 4929275..4931017 + 1743 WP_274319878.1 ABC transporter substrate-binding protein -
PUP77_RS22810 (PUP77_22810) 4931194..4931508 - 315 WP_053279913.1 XRE family transcriptional regulator Antitoxin
PUP77_RS22815 (PUP77_22815) 4931498..4931848 - 351 WP_231998601.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PUP77_RS22820 (PUP77_22820) 4932095..4933558 - 1464 WP_007929613.1 NADH-quinone oxidoreductase subunit NuoN -
PUP77_RS22825 (PUP77_22825) 4933566..4935098 - 1533 WP_053279911.1 NADH-quinone oxidoreductase subunit M -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 13859.83 Da        Isoelectric Point: 9.3419

>T272791 WP_231998601.1 NZ_CP118138:c4931848-4931498 [Pseudomonas chlororaphis]
MDALFIELPPFQRYRQDYLDDELFRSLQLELLKAPEAGDLIEGTGGLRKIRFVDERRHKGKRGGIRVIYYWWSGSAQFWL
FTLYAKNEQNDLTPHQKKLLKQLLNREVEARTHHET

Download         Length: 351 bp

Antitoxin


Download         Length: 105 a.a.        Molecular weight: 11903.87 Da        Isoelectric Point: 10.7886

>AT272791 WP_053279913.1 NZ_CP118138:c4931508-4931194 [Pseudomonas chlororaphis]
MKRDIFSELVEGFDALAKERQGKLTLRTHKVKLNALLPITAEEVLAVREQLNLSRSVFAMYLRTNTRTLENWEQGRAKPN
AQATILIRLVQRFPDTVERLAALA

Download         Length: 315 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References