Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 50064..50581 Replicon chromosome
Accession NZ_CP117979
Organism Staphylococcus aureus strain B-41012

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag PT798_RS00235 Protein ID WP_000113262.1
Coordinates 50064..50330 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID T1YB60
Locus tag PT798_RS00240 Protein ID WP_000584499.1
Coordinates 50330..50581 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PT798_RS00205 45489..46025 - 537 WP_031585827.1 GNAT family N-acetyltransferase -
PT798_RS00210 46258..47082 - 825 WP_000572040.1 formate/nitrite transporter family protein -
PT798_RS00215 47299..47481 - 183 WP_000230294.1 hypothetical protein -
PT798_RS00220 47565..48032 - 468 WP_000153344.1 SRPBCC domain-containing protein -
PT798_RS00225 48218..49768 - 1551 WP_000727763.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
PT798_RS00230 49952..50029 - 78 Protein_45 hypothetical protein -
PT798_RS00235 50064..50330 - 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
PT798_RS00240 50330..50581 - 252 WP_000584499.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
PT798_RS00245 50746..50847 - 102 WP_031774922.1 hypothetical protein -
PT798_RS00250 50854..51453 - 600 WP_000162813.1 DsbA family protein -
PT798_RS00255 51472..51834 - 363 WP_000819843.1 DUF4467 domain-containing protein -
PT798_RS00260 52089..53339 + 1251 WP_001012223.1 FemA/FemB family glycyltransferase FmhA -
PT798_RS00265 53436..54167 - 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
PT798_RS00270 54164..54883 - 720 WP_000479576.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T272635 WP_000113262.1 NZ_CP117979:c50330-50064 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9433.60 Da        Isoelectric Point: 4.3407

>AT272635 WP_000584499.1 NZ_CP117979:c50581-50330 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7BWF
PDB 6L8E
AlphaFold DB T1YB60

References