Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | DinJ-YafQ (relBE)/YafQ-RelB |
| Location | 225993..226534 | Replicon | plasmid unnamed1 |
| Accession | NZ_CP117961 | ||
| Organism | Escherichia coli strain JM109 | ||
Toxin (Protein)
| Gene name | yafQ | Uniprot ID | Q47149 |
| Locus tag | PT299_RS01180 | Protein ID | WP_000615983.1 |
| Coordinates | 225993..226271 (-) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | dinJ | Uniprot ID | Q47150 |
| Locus tag | PT299_RS01185 | Protein ID | WP_000729703.1 |
| Coordinates | 226274..226534 (-) | Length | 87 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT299_RS01155 (221899) | 221899..222068 | + | 170 | Protein_229 | hypothetical protein | - |
| PT299_RS01160 (222232) | 222232..223443 | + | 1212 | WP_000107627.1 | 3-(3-hydroxy-phenyl)propionate transporter | - |
| PT299_RS01165 (223545) | 223545..224084 | + | 540 | WP_001096705.1 | DUF2058 domain-containing protein | - |
| PT299_RS01170 (224359) | 224359..225126 | + | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| PT299_RS01175 (225097) | 225097..225837 | - | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| PT299_RS01180 (225993) | 225993..226271 | - | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin |
| PT299_RS01185 (226274) | 226274..226534 | - | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin |
| PT299_RS01190 (226744) | 226744..227493 | + | 750 | WP_000056849.1 | C40 family peptidase | - |
| PT299_RS01195 (227669) | 227669..228166 | + | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| PT299_RS01200 (228390) | 228390..230102 | - | 1713 | Protein_238 | flagellar biosynthesis protein FlhA | - |
| PT299_RS01205 (230074) | 230074..230859 | + | 786 | WP_000207552.1 | putative lateral flagellar export/assembly protein LafU | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | - | yagV/ecpE / yagW/ecpD / yagX/ecpC / yagY/ecpB / yagZ/ecpA / ykgK/ecpR / fdeC | 1..231544 | 231544 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|