Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
Location | 31134..31650 | Replicon | chromosome |
Accession | NZ_CP117811 | ||
Organism | Lentisphaera profundi strain SAORIC-696 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | - |
Locus tag | PQO03_RS00135 | Protein ID | WP_274150442.1 |
Coordinates | 31384..31650 (+) | Length | 89 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | - |
Locus tag | PQO03_RS00130 | Protein ID | WP_274150441.1 |
Coordinates | 31134..31391 (+) | Length | 86 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PQO03_RS00110 (PQO03_00110) | 26340..27230 | + | 891 | WP_274150437.1 | class I SAM-dependent methyltransferase | - |
PQO03_RS00115 (PQO03_00115) | 27217..27822 | + | 606 | WP_274150438.1 | hypothetical protein | - |
PQO03_RS00120 (PQO03_00120) | 27929..28852 | + | 924 | WP_274150439.1 | TIGR01777 family oxidoreductase | - |
PQO03_RS00125 (PQO03_00125) | 28975..30072 | + | 1098 | WP_274150440.1 | transposase | - |
PQO03_RS00130 (PQO03_00130) | 31134..31391 | + | 258 | WP_274150441.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
PQO03_RS00135 (PQO03_00135) | 31384..31650 | + | 267 | WP_274150442.1 | Txe/YoeB family addiction module toxin | Toxin |
PQO03_RS00140 (PQO03_00140) | 32468..33847 | + | 1380 | WP_274150443.1 | hypothetical protein | - |
PQO03_RS00145 (PQO03_00145) | 33844..34857 | + | 1014 | WP_274150444.1 | AAA family ATPase | - |
PQO03_RS00150 (PQO03_00150) | 35046..36539 | + | 1494 | WP_274150445.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Integron | - | fcl | 227..2808340 | 2808113 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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