Detailed information of TA system TA271949

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): ralRA/-
• Location: 566952..567322
• Replicon: chromosome
• Accession: NZ_CP117668
• Organism: Escherichia albertii strain BIA_11

Toxin (Protein)

• Gene name: ralR
• Uniprot ID: -
• Locus tag: PS054_RS03030
• Protein ID: WP_273814798.1
• Coordinates: 567128..567322 (-)
• Length: 65 a.a.

Antitoxin (RNA)

Gene name	ralA
Locus tag	-
Coordinates	566952..567129 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
PS054_RS03000 (562728)	562728..562901	+	174	WP_032275239.1	protein YnaL	-
PS054_RS03005 (562931)	562931..564304	+	1374	WP_059268187.1	ATP-dependent RNA helicase DbpA	-
PS054_RS03010 (564408)	564408..565343	-	936	WP_044712357.1	tRNA 2-thiocytidine(32) synthetase TtcA	-
PS054_RS03015 (565395)	565395..566630	-	1236	WP_059221776.1	site-specific integrase	-
PS054_RS03020 (566632)	566632..566847	-	216	WP_048969784.1	excisionase XisR	-
- (566952)	566952..567129	+	178	NuclAT_0	-	Antitoxin
- (566952)	566952..567129	+	178	NuclAT_0	-	Antitoxin
- (566952)	566952..567129	+	178	NuclAT_0	-	Antitoxin
- (566952)	566952..567129	+	178	NuclAT_0	-	Antitoxin
PS054_RS03025 (566947)	566947..567135	-	189	WP_273814796.1	DUF1187 family protein	-
PS054_RS03030 (567128)	567128..567322	-	195	WP_273814798.1	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	Toxin
PS054_RS03035 (567387)	567387..568439	-	1053	WP_273814800.1	RecT family recombinase	-
PS054_RS03040 (568451)	568451..571612	-	3162	WP_273814803.1	exodeoxyribonuclease VIII	-
PS054_RS03045 (571713)	571713..571987	-	275	Protein_602	hypothetical protein	-
PS054_RS03050 (572062)	572062..572232	-	171	WP_273814805.1	YdaE family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Prophage	-	-	565395..609143	43748

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Endodeoxyribonuclease toxin RalR (6-54)

Sequences

Toxin

Protein

• Length: 65 a.a.
• Molecular weight: 7114.11 Da
• Isoelectric Point: 8.9276

>T271949 WP_273814798.1 NZ_CP117668:c567322-567128 [Escherichia albertii]
MRYEKVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSDKEALERWNKRTAENINGGIYV

Nucleotide

• Length: 195 bp

Antitoxin

Nucleotide

• Length: 178 bp

>AT271949 NZ_CP117668:566952-567129 [Escherichia albertii]
AGGAATGAAGTTTCTCGCAATTAAAATTCATCAGTTTTACTTTTTGCTCTCTGGAAACGCCTGCTTCTTTTTTCCCTGAG
AGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTACCACCTTCCTTTTC
AATTGTGGCGGTAATTTT

Structures

Antitoxin