Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type I Classification (family/domain) hok-sok/-
Location 3758244..3758502 Replicon chromosome
Accession NZ_CP117568
Organism Escherichia albertii strain BIA_5-2

Toxin (Protein)


Gene name hokC Uniprot ID S1NX00
Locus tag PS053_RS18220 Protein ID WP_000809168.1
Coordinates 3758244..3758396 (-) Length 51 a.a.

Antitoxin (RNA)


Gene name sokC
Locus tag -
Coordinates 3758445..3758502 (+)

Genomic Context


PS053_RS18210PS053_RS18215--PS053_RS18225PS053_RS18230PS053_RS18235PS053_RS18200PS053_RS18205PS053_RS18220
Location: 3755001..3756917 (1917 bp)
Type: Others
Protein ID: WP_000516135.1
Location: 3757006..3758136 (1131 bp)
Type: Others
Protein ID: WP_001118445.1
Location: 3758445..3758502 (58 bp)
Type: Antitoxin
Protein ID: -
Location: 3759018..3759779 (762 bp)
Type: Others
Protein ID: WP_105198098.1
Location: 3759800..3761293 (1494 bp)
Type: Others
Protein ID: WP_059214855.1
Location: 3761447..3762694 (1248 bp)
Type: Others
Protein ID: WP_059224806.1
Location: 3753482..3754195 (714 bp)
Type: Others
Protein ID: WP_001102345.1
Location: 3754222..3754626 (405 bp)
Type: Others
Protein ID: WP_000833521.1
Location: 3758244..3758396 (153 bp)
Type: Toxin
Protein ID: WP_000809168.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
PS053_RS182003753482..3754195-714WP_001102345.1acidic protein MsyB-
PS053_RS182053754222..3754626-405WP_000833521.1DUF2541 family protein-
PS053_RS182103755001..3756917+1917WP_000516135.1molecular chaperone DnaK-
PS053_RS182153757006..3758136+1131WP_001118445.1molecular chaperone DnaJ-
PS053_RS182203758244..3758396-153WP_000809168.1type I toxin-antitoxin system toxin MokCToxin
-3758445..3758502+58--Antitoxin
PS053_RS182253759018..3759779+762WP_105198098.1outer membrane protein OmpK-
PS053_RS182303759800..3761293+1494WP_059214855.1sulfatase-like hydrolase/transferase-
PS053_RS182353761447..3762694+1248WP_059224806.1hypothetical protein-

Associated MGEs


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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(6-47)


Sequences


Toxin        


Download         Length: 51 a.a.        Molecular weight: 5501.57 Da        Isoelectric Point: 7.1312

>T271444 WP_000809168.1 NZ_CP117568:c3758396-3758244 [Escherichia albertii]
MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE

Download         Length: 153 bp


Antitoxin


Download         Length: 58 bp

>AT271444 NZ_CP117568:3758445-3758502 [Escherichia albertii]
GTTCAGCATATAGGGGGCCTCGGGTTGATGGTAAAATATCACTCGGGGCTTTTCTCTA

Similar Proteins


Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures


Toxin

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Source
ID
Structure
AlphaFold DBS1NX00


Antitoxin

Download structure file

References