Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HTH(antitoxin)
Location 4650934..4651536 Replicon chromosome
Accession NZ_CP117305
Organism Salmonella enterica subsp. enterica serovar Derby strain RM005

Toxin (Protein)


Gene name higB Uniprot ID A0A3Y7R225
Locus tag PQP92_RS22615 Protein ID WP_023232499.1
Coordinates 4651225..4651536 (-) Length 104 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag PQP92_RS22610 Protein ID WP_000362050.1
Coordinates 4650934..4651224 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PQP92_RS22595 (4648427) 4648427..4649329 + 903 WP_000331361.1 formate dehydrogenase subunit beta -
PQP92_RS22600 (4649326) 4649326..4649961 + 636 WP_000829025.1 formate dehydrogenase cytochrome b556 subunit -
PQP92_RS22605 (4649958) 4649958..4650887 + 930 WP_000027730.1 formate dehydrogenase accessory protein FdhE -
PQP92_RS22610 (4650934) 4650934..4651224 - 291 WP_000362050.1 DNA-binding transcriptional regulator Antitoxin
PQP92_RS22615 (4651225) 4651225..4651536 - 312 WP_023232499.1 hypothetical protein Toxin
PQP92_RS22620 (4651754) 4651754..4652683 + 930 WP_023232500.1 alpha/beta hydrolase -
PQP92_RS22625 (4652769) 4652769..4653080 + 312 WP_000558164.1 type II toxin-antitoxin system HigB family toxin -
PQP92_RS22630 (4653077) 4653077..4653523 + 447 WP_001259011.1 type II toxin-antitoxin system HigA family antitoxin -
PQP92_RS22635 (4653538) 4653538..4654479 - 942 WP_001518251.1 fatty acid biosynthesis protein FabY -
PQP92_RS22640 (4654524) 4654524..4654961 - 438 WP_000560969.1 D-aminoacyl-tRNA deacylase -
PQP92_RS22645 (4654958) 4654958..4655827 - 870 WP_023203606.1 virulence factor BrkB family protein -
PQP92_RS22650 (4655821) 4655821..4656420 - 600 WP_000965695.1 glucose-1-phosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(36-85)


Sequences

Toxin        


Download         Length: 104 a.a.        Molecular weight: 12388.34 Da        Isoelectric Point: 9.4460

>T270435 WP_023232499.1 NZ_CP117305:c4651536-4651225 [Salmonella enterica subsp. enterica serovar Derby]
MQFIETELFTEDVKKLLDDDEYHKFQVFMAQHPDCGDVIQETGGLRKMRWGVRGKGKRSGVRIIYFHRSQRYEIRLLLIY
QKGIKDDLTPQEKAVLRMLNERW

Download         Length: 312 bp

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10971.59 Da        Isoelectric Point: 10.6525

>AT270435 WP_000362050.1 NZ_CP117305:c4651224-4650934 [Salmonella enterica subsp. enterica serovar Derby]
MDKVLFERLTQSMSQMNEIIEGTREPSRTFHIDAMKIKEIRQASGLSQSKFAELISVNVDTLRNWEQGRRSPTGPAKALL
RAIANDPRNVIQALRY

Download         Length: 291 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3Y7R225

Antitoxin

Source ID Structure

References