Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/HigB-HTH_XRE |
Location | 6520..7232 | Replicon | plasmid p92_MLI108-1 |
Accession | NZ_CP116989 | ||
Organism | Escherichia coli strain MLI108K1 |
Toxin (Protein)
Gene name | higB | Uniprot ID | I2UJZ0 |
Locus tag | NL409_RS01085 | Protein ID | WP_000162415.1 |
Coordinates | 6520..6822 (+) | Length | 101 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | NL409_RS01090 | Protein ID | WP_032220986.1 |
Coordinates | 6894..7232 (+) | Length | 113 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NL409_RS01055 (NL409_001055) | 1539..2159 | - | 621 | WP_044862276.1 | hypothetical protein | - |
NL409_RS01060 (NL409_001060) | 2203..3108 | - | 906 | WP_080028513.1 | recombination-associated protein RdgC | - |
NL409_RS01065 (NL409_001065) | 3168..3821 | - | 654 | WP_197347754.1 | baseplate protein | - |
NL409_RS01070 (NL409_001070) | 3818..4798 | - | 981 | WP_000046500.1 | hypothetical protein | - |
NL409_RS01075 (NL409_001075) | 4802..5569 | - | 768 | WP_197347753.1 | baseplate | - |
NL409_RS01080 (NL409_001080) | 5566..6357 | - | 792 | WP_197347752.1 | phage tail protein | - |
NL409_RS01085 (NL409_001085) | 6520..6822 | + | 303 | WP_000162415.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
NL409_RS01090 (NL409_001090) | 6894..7232 | + | 339 | WP_032220986.1 | HigA family addiction module antitoxin | Antitoxin |
NL409_RS01095 (NL409_001095) | 7289..7474 | + | 186 | Protein_10 | hypothetical protein | - |
NL409_RS01100 (NL409_001100) | 7511..8239 | + | 729 | WP_197347751.1 | hypothetical protein | - |
NL409_RS01105 (NL409_001105) | 8273..9466 | - | 1194 | WP_097433648.1 | phage tail protein | - |
NL409_RS01110 (NL409_001110) | 9459..9788 | - | 330 | WP_000542383.1 | hypothetical protein | - |
NL409_RS01115 (NL409_001115) | 10117..10770 | - | 654 | WP_001557715.1 | hypothetical protein | - |
NL409_RS01120 (NL409_001120) | 11039..11662 | + | 624 | WP_202117614.1 | hypothetical protein | - |
NL409_RS01125 (NL409_001125) | 11683..12075 | + | 393 | WP_000824759.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | - | 1..92487 | 92487 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|