Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 3676587..3677314 Replicon chromosome
Accession NZ_CP116976
Organism Escherichia coli strain CUVM53

Toxin (Protein)


Gene name higB Uniprot ID U9ZMR4
Locus tag PQP10_RS17820 Protein ID WP_000550189.1
Coordinates 3676587..3676901 (+) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag PQP10_RS17825 Protein ID WP_000560255.1
Coordinates 3676898..3677314 (+) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PQP10_RS17800 (3672753) 3672753..3673739 - 987 WP_094337096.1 Gfo/Idh/MocA family oxidoreductase -
PQP10_RS17805 (3673818) 3673818..3674501 - 684 WP_001183041.1 vancomycin high temperature exclusion protein -
PQP10_RS17810 (3674578) 3674578..3675081 - 504 WP_001295542.1 M48 family metallopeptidase -
PQP10_RS17815 (3675166) 3675166..3676302 + 1137 WP_000018690.1 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG -
PQP10_RS17820 (3676587) 3676587..3676901 + 315 WP_000550189.1 type II toxin-antitoxin system toxin HigB Toxin
PQP10_RS17825 (3676898) 3676898..3677314 + 417 WP_000560255.1 type II toxin-antitoxin system antitoxin HigA Antitoxin
PQP10_RS17830 (3677359) 3677359..3679377 - 2019 WP_272771635.1 NADPH-dependent 2,4-dienoyl-CoA reductase -
PQP10_RS17835 (3679703) 3679703..3682054 - 2352 WP_000695495.1 alpha-glucosidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, mRNA interferase HigB

(20-92)

Antitoxin

Antitoxin HigA

(1-138)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 12103.10 Da        Isoelectric Point: 10.0409

>T269597 WP_000550189.1 NZ_CP116976:3676587-3676901 [Escherichia coli]
MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK

Download         Length: 315 bp

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 14951.41 Da        Isoelectric Point: 4.5577

>AT269597 WP_000560255.1 NZ_CP116976:3676898-3677314 [Escherichia coli]
MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNAPENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGG
IAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID

Download         Length: 417 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6KMQ
PDB 5IFG
PDB 5YCL
PDB 6KML

Antitoxin

Source ID Structure

References