Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yafN-yafO (relBE)/YafO-YafN
Location 3398565..3399259 Replicon chromosome
Accession NZ_CP116477
Organism Pectobacterium sp. A5351

Toxin (Protein)


Gene name yafO Uniprot ID -
Locus tag O1Q74_RS15720 Protein ID WP_271874564.1
Coordinates 3398565..3398969 (-) Length 135 a.a.

Antitoxin (Protein)


Gene name yafN Uniprot ID -
Locus tag O1Q74_RS15725 Protein ID WP_226308436.1
Coordinates 3398966..3399259 (-) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
O1Q74_RS15710 (O1Q74_15710) 3394069..3395787 + 1719 WP_271874562.1 proline--tRNA ligase -
O1Q74_RS15715 (O1Q74_15715) 3396012..3398234 - 2223 WP_271874563.1 ferric-rhodotorulic acid/ferric-coprogen receptor FhuE -
O1Q74_RS15720 (O1Q74_15720) 3398565..3398969 - 405 WP_271874564.1 type II toxin-antitoxin system YafO family toxin Toxin
O1Q74_RS15725 (O1Q74_15725) 3398966..3399259 - 294 WP_226308436.1 type I toxin-antitoxin system antitoxin YafN Antitoxin
O1Q74_RS15730 (O1Q74_15730) 3399798..3400211 + 414 WP_271874565.1 GNAT family N-acetyltransferase -
O1Q74_RS15735 (O1Q74_15735) 3400241..3400930 + 690 WP_271874566.1 LuxR C-terminal-related transcriptional regulator -
O1Q74_RS15740 (O1Q74_15740) 3400945..3402261 + 1317 WP_271874567.1 cytosine permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase toxin YafO

(29-132)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 135 a.a.        Molecular weight: 15612.07 Da        Isoelectric Point: 7.9352

>T268729 WP_271874564.1 NZ_CP116477:c3398969-3398565 [Pectobacterium sp. A5351]
MSIRIFKSTLLCQQLSQQELDDLVADFLSYKQDGVLPDTFGRDALYDDDRTYPLVRKEQVAHIHLADAHAPFPKFLRQFK
RTSDKAHLVYCQSAMDPDIYLLIIILKPEAHKMARNNNNMHKVGVMPEAFRMKY

Download         Length: 405 bp

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 10820.29 Da        Isoelectric Point: 5.1864

>AT268729 WP_226308436.1 NZ_CP116477:c3399259-3398966 [Pectobacterium sp. A5351]
MERILAEKSINITELRKNPAKYFIDEPVAVLSNNRPAGYMVSAKVFEALIDLLEDKQGRVHTAARFRPTAERLSDIADSG
AALLKNASDKDLNEFTE

Download         Length: 294 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References