Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 456555..457057 Replicon chromosome
Accession NZ_CP116477
Organism Pectobacterium sp. A5351

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag O1Q74_RS02155 Protein ID WP_271875893.1
Coordinates 456555..456809 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag O1Q74_RS02160 Protein ID WP_225086722.1
Coordinates 456806..457057 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
O1Q74_RS02135 (O1Q74_02135) 451710..452972 - 1263 WP_271875889.1 L-rhamnose isomerase -
O1Q74_RS02140 (O1Q74_02140) 452969..454459 - 1491 WP_271875890.1 rhamnulokinase -
O1Q74_RS02145 (O1Q74_02145) 454795..455634 + 840 WP_271875891.1 HTH-type transcriptional activator RhaS -
O1Q74_RS02150 (O1Q74_02150) 455659..456513 + 855 WP_271875892.1 helix-turn-helix domain-containing protein -
O1Q74_RS02155 (O1Q74_02155) 456555..456809 - 255 WP_271875893.1 Txe/YoeB family addiction module toxin Toxin
O1Q74_RS02160 (O1Q74_02160) 456806..457057 - 252 WP_225086722.1 YoeB-YefM toxin-antitoxin system antitoxin YefM Antitoxin
O1Q74_RS02165 (O1Q74_02165) 457133..458836 - 1704 WP_271875894.1 ABC transporter ATP-binding protein -
O1Q74_RS02170 (O1Q74_02170) 458833..459699 - 867 WP_271875895.1 ABC transporter permease -
O1Q74_RS02175 (O1Q74_02175) 459692..460651 - 960 WP_271875896.1 ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10210.75 Da        Isoelectric Point: 7.3555

>T268718 WP_271875893.1 NZ_CP116477:c456809-456555 [Pectobacterium sp. A5351]
VKLIWSEEAWEDYLYWQDIDKRMVKKINELIKETHRTPFEGKGKPEPLKHNLAGFWSRRITEEHRLVYAITDDAMMIAAC
RYHY

Download         Length: 255 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9390.68 Da        Isoelectric Point: 4.8223

>AT268718 WP_225086722.1 NZ_CP116477:c457057-456806 [Pectobacterium sp. A5351]
MRTISYSEARQNLSATMMKTVEDRAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANAKRLMNSIESLKAGHGEERD
IIE

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References