Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | DinJ-YafQ (relBE)/YafQ-RelB |
Location | 3802842..3803383 | Replicon | chromosome |
Accession | NZ_CP116197 | ||
Organism | Escherichia coli strain DETEC-C31 |
Toxin (Protein)
Gene name | yafQ | Uniprot ID | Q32JN3 |
Locus tag | PIB97_RS18185 | Protein ID | WP_000615980.1 |
Coordinates | 3803105..3803383 (+) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | dinJ | Uniprot ID | Q32JN2 |
Locus tag | PIB97_RS18180 | Protein ID | WP_000729709.1 |
Coordinates | 3802842..3803102 (+) | Length | 87 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PIB97_RS18165 (3798924) | 3798924..3801017 | + | 2094 | WP_021556448.1 | flagellar biosynthesis protein FlhA | - |
PIB97_RS18170 (3801210) | 3801210..3801707 | - | 498 | WP_021556447.1 | REP-associated tyrosine transposase RayT | - |
PIB97_RS18175 (3801883) | 3801883..3802632 | - | 750 | WP_000056850.1 | C40 family peptidase | - |
PIB97_RS18180 (3802842) | 3802842..3803102 | + | 261 | WP_000729709.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin |
PIB97_RS18185 (3803105) | 3803105..3803383 | + | 279 | WP_000615980.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin |
PIB97_RS18190 (3803539) | 3803539..3804279 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
PIB97_RS18195 (3804250) | 3804250..3805017 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
PIB97_RS18200 (3805223) | 3805223..3805801 | - | 579 | WP_089628370.1 | D-sedoheptulose 7-phosphate isomerase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | - | gmhA/lpcA | 3801883..3811635 | 9752 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A090NH48 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A829FY17 |