Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 4799322..4799911 Replicon chromosome
Accession NZ_CP115911
Organism Xanthomonas oryzae pv. oryzae strain NE-8

Toxin (Protein)


Gene name graT Uniprot ID A0A8E2YMU3
Locus tag PEV90_RS22695 Protein ID WP_011260747.1
Coordinates 4799630..4799911 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag PEV90_RS22690 Protein ID WP_011260746.1
Coordinates 4799322..4799612 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PEV90_RS22660 (PEV90_22660) 4794466..4795074 - 609 WP_011409746.1 DUF4123 domain-containing protein -
PEV90_RS22665 (PEV90_22665) 4795077..4795499 - 423 WP_042465811.1 PAAR domain-containing protein -
PEV90_RS22670 (PEV90_22670) 4795627..4795953 - 327 WP_228329596.1 hypothetical protein -
PEV90_RS22675 (PEV90_22675) 4796208..4796540 + 333 WP_011260743.1 hypothetical protein -
PEV90_RS22680 (PEV90_22680) 4796700..4796887 + 188 Protein_4333 hypothetical protein -
PEV90_RS22685 (PEV90_22685) 4796990..4798384 - 1395 WP_027703652.1 type III secretion system effector XopQ -
PEV90_RS22690 (PEV90_22690) 4799322..4799612 - 291 WP_011260746.1 HigA family addiction module antitoxin Antitoxin
PEV90_RS22695 (PEV90_22695) 4799630..4799911 - 282 WP_011260747.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PEV90_RS22700 (PEV90_22700) 4800006..4802258 - 2253 WP_011409750.1 exodeoxyribonuclease V subunit alpha -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(4-93)

Antitoxin

Cro/C1-type helix-turn-helix domain

(14-68)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 11070.83 Da        Isoelectric Point: 10.2139

>T267489 WP_011260747.1 NZ_CP115911:c4799911-4799630 [Xanthomonas oryzae pv. oryzae]
MIRSFIDKDAEKIWLGERSRRLPADIQLVARRKLRMLNAAAHLDDLRIPPANRLEALKGQQRGQYSIRINDQWRICFRWM
EGDVVQVEIVDYH

Download         Length: 282 bp

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10420.07 Da        Isoelectric Point: 7.2040

>AT267489 WP_011260746.1 NZ_CP115911:c4799612-4799322 [Xanthomonas oryzae pv. oryzae]
MTVLPNIHPGDILLEEFLEPLGISQNALARATGVPPRRINEIVLGKRGITADTAVRLAAALGTSERFWLGLQADYELEQA
HRALGDLPARIKRLAA

Download         Length: 291 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References