Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 1450304..1451094 Replicon chromosome
Accession NZ_CP115663
Organism Pseudomonas putida strain PD584_L3

Toxin (Protein)


Gene name yhaV Uniprot ID Q88NE5
Locus tag PED35_RS06615 Protein ID WP_010952397.1
Coordinates 1450304..1450771 (-) Length 156 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID I7C311
Locus tag PED35_RS06620 Protein ID WP_014859917.1
Coordinates 1450768..1451094 (-) Length 109 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PED35_RS06595 (PED35_06595) 1445467..1446996 + 1530 WP_010952395.1 efflux transporter outer membrane subunit -
PED35_RS06600 (PED35_06600) 1446993..1449170 + 2178 WP_003251716.1 FUSC family protein -
PED35_RS06605 (PED35_06605) 1449160..1449360 + 201 WP_003251718.1 DUF1656 domain-containing protein -
PED35_RS06610 (PED35_06610) 1449371..1450231 + 861 WP_010952396.1 HlyD family secretion protein -
PED35_RS06615 (PED35_06615) 1450304..1450771 - 468 WP_010952397.1 type II toxin-antitoxin system YhaV family toxin Toxin
PED35_RS06620 (PED35_06620) 1450768..1451094 - 327 WP_014859917.1 type II toxin-antitoxin system PrlF family antitoxin Antitoxin
PED35_RS06625 (PED35_06625) 1451187..1451633 - 447 WP_010952399.1 universal stress protein -
PED35_RS06630 (PED35_06630) 1451907..1452812 + 906 WP_010952400.1 LysR family transcriptional regulator -
PED35_RS06635 (PED35_06635) 1452929..1454470 + 1542 WP_010952401.1 MFS transporter -
PED35_RS06640 (PED35_06640) 1454499..1455560 + 1062 WP_049587435.1 HlyD family secretion protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(17-152)

Antitoxin

PrlF antitoxin

(8-106)


Sequences

Toxin        


Download         Length: 156 a.a.        Molecular weight: 17962.34 Da        Isoelectric Point: 9.7963

>T267229 WP_010952397.1 NZ_CP115663:c1450771-1450304 [Pseudomonas putida]
MSDASRKPLVIHGWTVIAHPLFLAKLDALSAQVEAQRDKDPTGYTKRNTFKRLAAIRRLAFDVIPQDPTKPEYRQGATLG
GDHKHWFRAKFFQQYRLFFRYHTPSRIIVLAWINDESSKRAYESSDDAYKVFQKMLHSGNPPDDWDQLLQEAAAD

Download         Length: 468 bp

Antitoxin


Download         Length: 109 a.a.        Molecular weight: 11919.40 Da        Isoelectric Point: 4.3722

>AT267229 WP_014859917.1 NZ_CP115663:c1451094-1450768 [Pseudomonas putida]
MAATFDVESTLTDRYQTTVPETVRRALGLKKRDKIHYSIRPDGGVILTRAEATEDDPVLGKFLDFLAHDIATNPQRLQVV
DAGLIARLDKLVGDAEVDLDQPLSADDE

Download         Length: 327 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB Q88NE5

Antitoxin

Source ID Structure
AlphaFold DB I7C311

References