Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HTH(antitoxin)
Location 1374420..1375021 Replicon chromosome
Accession NZ_CP115663
Organism Pseudomonas putida strain PD584_L3

Toxin (Protein)


Gene name higB Uniprot ID A0A2L1IAQ2
Locus tag PED35_RS06255 Protein ID WP_049587984.1
Coordinates 1374707..1375021 (-) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID A0A2L1IAR7
Locus tag PED35_RS06250 Protein ID WP_049587986.1
Coordinates 1374420..1374707 (-) Length 96 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PED35_RS06230 (PED35_06230) 1369452..1370297 + 846 WP_003254799.1 DUF6502 family protein -
PED35_RS06235 (PED35_06235) 1370294..1372012 + 1719 WP_010952348.1 DUF5666 domain-containing protein -
PED35_RS06240 (PED35_06240) 1372067..1372816 + 750 WP_049587988.1 hypothetical protein -
PED35_RS06245 (PED35_06245) 1372888..1374219 - 1332 WP_004576169.1 30S ribosomal protein S12 methylthiotransferase RimO -
PED35_RS06250 (PED35_06250) 1374420..1374707 - 288 WP_049587986.1 helix-turn-helix domain-containing protein Antitoxin
PED35_RS06255 (PED35_06255) 1374707..1375021 - 315 WP_049587984.1 hypothetical protein Toxin
PED35_RS06260 (PED35_06260) 1375470..1377380 + 1911 WP_010952353.1 potassium transporter Kup -
PED35_RS06265 (PED35_06265) 1377429..1378721 - 1293 WP_010952354.1 AcvB/VirJ family lysyl-phosphatidylglycerol hydrolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(36-88)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 11784.61 Da        Isoelectric Point: 9.9097

>T267228 WP_049587984.1 NZ_CP115663:c1375021-1374707 [Pseudomonas putida]
MIFIETPVFTSDLKEHLDDEEYRALQAYLAEHPEAGSLLEETGGLRKIRWAAKGKGKSGGVRVIYYHVTAAHQIRMILIY
RKGIVDTLTSSQKAQLRALNKGWK

Download         Length: 315 bp

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 10841.31 Da        Isoelectric Point: 7.4063

>AT267228 WP_049587986.1 NZ_CP115663:c1374707-1374420 [Pseudomonas putida]
MEKHLFDRLVESMTQMDEIDRGERQPSREFHVDALQVKKIRQATGLSQAAFAKRIDVAVGTLRNWEQGRREPEGPARALL
RAIHNDPEHVLAALS

Download         Length: 288 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2L1IAQ2

Antitoxin

Source ID Structure
AlphaFold DB A0A2L1IAR7

References