Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2587916..2588439 Replicon chromosome
Accession NC_017347
Organism Staphylococcus aureus subsp. aureus T0131

Toxin (Protein)


Gene name yoeB Uniprot ID X5DYX7
Locus tag SAT0131_RS13255 Protein ID WP_000074048.1
Coordinates 2587916..2588182 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID W8TQT5
Locus tag SAT0131_RS13260 Protein ID WP_000587616.1
Coordinates 2588182..2588439 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SAT0131_RS13235 2583223..2584410 - 1188 WP_000026194.1 MFS transporter -
SAT0131_RS13240 2584806..2585582 - 777 WP_000072147.1 iron export ABC transporter permease subunit FetB -
SAT0131_RS13245 2585575..2586237 - 663 WP_000923520.1 ATP-binding cassette domain-containing protein -
SAT0131_RS13250 2586485..2587561 - 1077 WP_001076671.1 M42 family metallopeptidase -
SAT0131_RS13255 2587916..2588182 - 267 WP_000074048.1 Txe/YoeB family addiction module toxin Toxin
SAT0131_RS13260 2588182..2588439 - 258 WP_000587616.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
SAT0131_RS13265 2588545..2588739 - 195 WP_001790145.1 hypothetical protein -
SAT0131_RS13270 2588798..2589253 + 456 WP_000732082.1 DUF1307 domain-containing protein -
SAT0131_RS13275 2589421..2590998 - 1578 WP_000143501.1 FMN-binding glutamate synthase family protein -
SAT0131_RS13280 2591193..2591942 + 750 WP_000072442.1 hypothetical protein -
SAT0131_RS13285 2592166..2593359 - 1194 WP_000675401.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(25-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10648.23 Da        Isoelectric Point: 10.1384

>T26716 WP_000074048.1 NC_017347:c2588182-2587916 [Staphylococcus aureus subsp. aureus T0131]
MSNYTVKIKNSAKSDLKKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

>T26716 NC_017347:c2588182-2587916 [Staphylococcus aureus subsp. aureus T0131]
ATGAGCAATTACACGGTTAAGATTAAAAATTCAGCGAAATCAGATTTAAAGAAAATAAAACATTCTTATTTAAAGAAGTC
ATTTTTAGAAATTGTTGAGACTTTAAAAAATGATCCGTATAAAATAACACAATCTTTTGAAAAATTAGAGCCTAAATATT
TAGAGCGATATTCAAGAAGAATTAACCATCAGCACAGGGTCGTCTATACCGTAGATGATCGAAATAAAGAAGTATTAATA
CTATCGGCATGGTCACATTATGATTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9774.73 Da        Isoelectric Point: 4.1353

>AT26716 WP_000587616.1 NC_017347:c2588439-2588182 [Staphylococcus aureus subsp. aureus T0131]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDNSGTTNIDDI
DWDNL

Download         Length: 258 bp

>AT26716 NC_017347:c2588439-2588182 [Staphylococcus aureus subsp. aureus T0131]
ATGATTATCACTAGCCCTACAGAAGCGAGAAAAGATTTTTATCAATTACTAAAAAATGTTAATAATAATCACGAACCAAT
TTATATTAGTGGCAATAATGCCGAAAATAATGCTGTGATTATAGGTTTAGAAGATTGGAAAAGTATACAAGAGACAATAT
ATCTTGAATCTACTGGTACAATGGACAAAGTAAGAGAAAGAGAAAAAGATAATAGTGGTACAACAAATATAGATGATATT
GATTGGGATAATCTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 7V6W
PDB 7V5Y
PDB 7V5Z

Antitoxin

Source ID Structure
PDB 7V6W
PDB 7V5Z
PDB 7V5Y
AlphaFold DB W8TQT5

References