Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2620452..2620975 Replicon chromosome
Accession NC_017341
Organism Staphylococcus aureus subsp. aureus str. JKD6008

Toxin (Protein)


Gene name yoeB Uniprot ID X5DYX7
Locus tag SAA6008_RS13645 Protein ID WP_000074048.1
Coordinates 2620452..2620718 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID W8TQT5
Locus tag SAA6008_RS13650 Protein ID WP_000587616.1
Coordinates 2620718..2620975 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SAA6008_RS13625 2615759..2616946 - 1188 WP_000026194.1 MFS transporter -
SAA6008_RS13630 2617342..2618118 - 777 WP_000072147.1 iron export ABC transporter permease subunit FetB -
SAA6008_RS13635 2618111..2618773 - 663 WP_000923520.1 ATP-binding cassette domain-containing protein -
SAA6008_RS13640 2619021..2620097 - 1077 WP_001076671.1 M42 family metallopeptidase -
SAA6008_RS13645 2620452..2620718 - 267 WP_000074048.1 Txe/YoeB family addiction module toxin Toxin
SAA6008_RS13650 2620718..2620975 - 258 WP_000587616.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
SAA6008_RS13660 2621334..2621789 + 456 WP_000732082.1 DUF1307 domain-containing protein -
SAA6008_RS13665 2621957..2623534 - 1578 WP_000143503.1 FMN-binding glutamate synthase family protein -
SAA6008_RS13670 2623729..2624478 + 750 WP_000072442.1 hypothetical protein -
SAA6008_RS13675 2624702..2625895 - 1194 WP_000675401.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(25-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10648.23 Da        Isoelectric Point: 10.1384

>T26656 WP_000074048.1 NC_017341:c2620718-2620452 [Staphylococcus aureus subsp. aureus str. JKD6008]
MSNYTVKIKNSAKSDLKKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

>T26656 NC_017341:c2620718-2620452 [Staphylococcus aureus subsp. aureus str. JKD6008]
ATGAGCAATTACACGGTTAAGATTAAAAATTCAGCGAAATCAGATTTAAAGAAAATAAAACATTCTTATTTAAAGAAGTC
ATTTTTAGAAATTGTTGAGACTTTAAAAAATGATCCGTATAAAATAACACAATCTTTTGAAAAATTAGAGCCTAAATATT
TAGAGCGATATTCAAGAAGAATTAACCATCAGCACAGGGTCGTCTATACCGTAGATGATCGAAATAAAGAAGTATTAATA
CTATCGGCATGGTCACATTATGATTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9774.73 Da        Isoelectric Point: 4.1353

>AT26656 WP_000587616.1 NC_017341:c2620975-2620718 [Staphylococcus aureus subsp. aureus str. JKD6008]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDNSGTTNIDDI
DWDNL

Download         Length: 258 bp

>AT26656 NC_017341:c2620975-2620718 [Staphylococcus aureus subsp. aureus str. JKD6008]
ATGATTATCACTAGCCCTACAGAAGCGAGAAAAGATTTTTATCAATTACTAAAAAATGTTAATAATAATCACGAACCAAT
TTATATTAGTGGCAATAATGCCGAAAATAATGCTGTGATTATAGGTTTAGAAGATTGGAAAAGTATACAAGAGACAATAT
ATCTTGAATCTACTGGTACAATGGACAAAGTAAGAGAAAGAGAAAAAGATAATAGTGGTACAACAAATATAGATGATATT
GATTGGGATAATCTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 7V6W
PDB 7V5Y
PDB 7V5Z

Antitoxin

Source ID Structure
PDB 7V6W
PDB 7V5Z
PDB 7V5Y
AlphaFold DB W8TQT5

References